BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0494.p
         (280 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093571|ref|YP_001098646.1| hypothetical protein HEAR0290 [...   138   4e-34

>gi|134093571|ref|YP_001098646.1| hypothetical protein HEAR0290
           [Herminiimonas arsenicoxydans]
          Length = 234

 Score =  138 bits (347), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/232 (42%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 39  FRHNLAATQQRIVAACARVGRDPASVRLLPVSKTKSQAAIRLAYAAGCRMLGENKPQEAW 98
            R NL A +QRI  A     RD   V LL VSKT    A+  A  AG R  GEN  QEA 
Sbjct: 4   IRQNLQAVRQRITDAANSAQRDVHEVELLAVSKTFGADAVLAAAEAGQRAFGENYLQEAL 63

Query: 99  QKWQALQ----DLPDLQWSVIGHLQTNKAKLVARFASEFQALDSLRLAEVLERRLQIEGR 154
            K  A++    DLP L+W  IG +Q+NK + +A       A+D  ++A  L  +      
Sbjct: 64  DKMDAVRAIRPDLP-LEWHFIGPVQSNKTRPIAEHFDWVHAVDREKIAHRLSEQRPATLP 122

Query: 155 GLDVLVQVNTSGEASKYGLEPDQVAPFLRQLRAFPALRLRGLMTLAVLSAEPERVRPCFA 214
            L++ +QVN SGEASK G  P       + +   P LRLRGLM +     +  R R  F 
Sbjct: 123 PLNICLQVNISGEASKSGALPADAPGLAKAIAKLPHLRLRGLMAIPEPEDDEVRQRRSFH 182

Query: 215 RLRQLRERLRQELPDGALLQDLSMGMSGDAEIAIEEGATVVRVGQAIFGARD 266
           +LR L E+LR E   G  L  LSMGMS D   AI EGAT+VR+G AIFG R+
Sbjct: 183 QLRVLYEQLRAE---GLPLDTLSMGMSADMPAAIAEGATIVRIGSAIFGTRN 231


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 521,374
Number of extensions: 19131
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 199
Effective length of database: 733,452
Effective search space: 145956948
Effective search space used: 145956948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)