BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0493.p
         (70 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094972|ref|YP_001100047.1| RNA chaperone [Herminiimonas ar...   101   6e-24
gi|134095543|ref|YP_001100618.1| cold shock DNA -binding domain-...    93   2e-21
gi|134095623|ref|YP_001100698.1| RNA chaperone [Herminiimonas ar...    91   9e-21

>gi|134094972|ref|YP_001100047.1| RNA chaperone [Herminiimonas
          arsenicoxydans]
          Length = 67

 Score =  101 bits (252), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 56/65 (86%)

Query: 5  TGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSNGFRSLSENQRVSFDRGVGPKGEKAT 64
          TG+VKWFND+KGFGFITPD GG D+FAHF  IQS+GF+SL ENQRVSF+   GPKG++A+
Sbjct: 3  TGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSSGFKSLQENQRVSFEVTAGPKGKQAS 62

Query: 65 NIKVI 69
          NI+ I
Sbjct: 63 NIQPI 67


>gi|134095543|ref|YP_001100618.1| cold shock DNA -binding
          domain-containing protein [Herminiimonas
          arsenicoxydans]
          Length = 67

 Score = 93.2 bits (230), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 52/64 (81%)

Query: 4  QTGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSNGFRSLSENQRVSFDRGVGPKGEKA 63
          QTG VKWFND+KGFGFITPD+GG D+FAHF  I   GF++L E Q+VSF+   GPKG++A
Sbjct: 2  QTGTVKWFNDSKGFGFITPDSGGEDLFAHFSAITMEGFKTLKEGQKVSFEVTQGPKGKQA 61

Query: 64 TNIK 67
          +NIK
Sbjct: 62 SNIK 65


>gi|134095623|ref|YP_001100698.1| RNA chaperone [Herminiimonas
          arsenicoxydans]
          Length = 67

 Score = 91.3 bits (225), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 51/64 (79%)

Query: 5  TGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSNGFRSLSENQRVSFDRGVGPKGEKAT 64
          TG VKWFND+KGFGFITPD GG D+FAHF  IQ NGF++L E Q+V F+   GPKG++A+
Sbjct: 3  TGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQGPKGKQAS 62

Query: 65 NIKV 68
          NI+ 
Sbjct: 63 NIQA 66


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 138,048
Number of extensions: 4334
Number of successful extensions: 12
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 3
Length of query: 70
Length of database: 1,000,347
Length adjustment: 41
Effective length of query: 29
Effective length of database: 865,252
Effective search space: 25092308
Effective search space used: 25092308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 121 (51.2 bits)