BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0492.p
         (955 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093716|ref|YP_001098791.1| hypothetical protein HEAR0446 [...    69   1e-12
gi|134093706|ref|YP_001098781.1| hypothetical protein HEAR0435 [...    61   2e-10
gi|134095716|ref|YP_001100791.1| hypothetical protein HEAR2548 [...    58   2e-09

>gi|134093716|ref|YP_001098791.1| hypothetical protein HEAR0446
           [Herminiimonas arsenicoxydans]
          Length = 399

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 5/117 (4%)

Query: 804 RRGTLTEEDRFAINNHIVQTLVMLKSLPWPDSLKSVPDTAANHHEKMDGSGYPRRLRAST 863
           + G LT+E+   +  H V+   +L   P  D  ++  D   +HHE+ DG+GYP RL    
Sbjct: 205 KPGQLTDEEFVVVKEHPVEGHKILSVSP--DVSEAALDVCLHHHERFDGTGYPHRLAGEN 262

Query: 864 LPLQDRVMALADVFEALTAADRPYKPAKTLSESLRIMAAMCRDQHLDTELFRYFLRS 920
           + L  R+ A+ DV++A+T ++R YK     SESLR MA      H D  +F+ F++ 
Sbjct: 263 ISLFARMGAVCDVYDAIT-SNRAYKAGWEPSESLRRMAEW--KGHFDPAVFQAFVKC 316


>gi|134093706|ref|YP_001098781.1| hypothetical protein HEAR0435
           [Herminiimonas arsenicoxydans]
          Length = 457

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 843 AANHHEKMDGSGYPRRLRASTLPLQDRVMALADVFEALTAADRPYKPAKTLSESLRIMA 901
           A  HHE++DG GYPR L+A  + ++ R++  AD+F+A+T A+RPY+ A  +  +L +MA
Sbjct: 376 AGAHHERLDGGGYPRGLKADAISIETRIITTADIFDAIT-AERPYRGAIPIPRTLEMMA 433


>gi|134095716|ref|YP_001100791.1| hypothetical protein HEAR2548
           [Herminiimonas arsenicoxydans]
          Length = 198

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 3/130 (2%)

Query: 790 HYRQNMGELHNLTVRRGTLTEEDRFAINNHIVQTLVMLKSLPWPDSLKSVPDTAANHHEK 849
           H    +G   N+  + G LT+E+   + +H  +   + ++   P + +  P    +HHE 
Sbjct: 69  HDIGKIGVPDNVLKKPGPLTQEEWVLMRSHTERGERIFRATGLPIADRIAP-IIRHHHEV 127

Query: 850 MDGSGYPRRLRASTLPLQDRVMALADVFEALTAADRPYKPAKTLSESLRIMAAMCRDQHL 909
           ++G+GYP  L+   +PL  R++A+AD ++A+T   RPY+ A T  +SL  +  + +    
Sbjct: 128 INGTGYPDGLQGEEIPLMSRILAVADAYDAMTTT-RPYREALTHRQSLDFI-ELDKGVKF 185

Query: 910 DTELFRYFLR 919
           DT +   F +
Sbjct: 186 DTAIVGVFFK 195


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,745,244
Number of extensions: 71144
Number of successful extensions: 214
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 3
Length of query: 955
Length of database: 1,000,347
Length adjustment: 91
Effective length of query: 864
Effective length of database: 700,502
Effective search space: 605233728
Effective search space used: 605233728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)