BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0485.p
         (239 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095863|ref|YP_001100938.1| tRNA (m7G46) methyltransferase,...   379   e-107

>gi|134095863|ref|YP_001100938.1| tRNA (m7G46) methyltransferase,
           SAM-dependent [Herminiimonas arsenicoxydans]
          Length = 239

 Score =  379 bits (974), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 179/237 (75%), Positives = 202/237 (85%), Gaps = 3/237 (1%)

Query: 2   SENKAGKPLFYDPSERRIRSFVTRAGRVSVAQGRALEELGPRFLVPYEKAPLDLAATFGR 61
           S++   KPLFYDP+E RIRSFVTRAGR+S AQ RA+EELGP+F +PY KAPLD+   F R
Sbjct: 6   SDDGHNKPLFYDPTEHRIRSFVTRAGRLSTAQARAIEELGPQFFIPYAKAPLDIDQAFSR 65

Query: 62  QAPTILEIGFGMGETSAKISALMPEKNFIGVEVHTPGVGSYLKLIGEGELDNVRIIQHDA 121
            APTI EIGFGMGET+A I+A MP+KNFIGVEVHTPGVGS LK IGE EL N+RIIQHDA
Sbjct: 66  TAPTIFEIGFGMGETTANIAAGMPDKNFIGVEVHTPGVGSLLKQIGERELTNLRIIQHDA 125

Query: 122 VEVLTNMIAPATLAGVHVFFPDPWHKARHNKRRLIQSPLVQLISSRLAPGGYIHCATDWE 181
            EVLTNMIAPA+LAGVHVFFPDPWHKARHNKRRLIQ PLVQL+SSR+  GGY+HCATDW+
Sbjct: 126 FEVLTNMIAPASLAGVHVFFPDPWHKARHNKRRLIQPPLVQLLSSRIKTGGYLHCATDWQ 185

Query: 182 EYAVQMLEVLSAEPTLKNTATDPSGYVPRPEYRDTTKFENRGLRLGHGVWDLVFEKR 238
           EYA QMLEVL AE +L+NTA     Y PRP+YR  TKFENRG++LGHGVWDLVFEK+
Sbjct: 186 EYAEQMLEVLGAEASLRNTA---DTYAPRPDYRPVTKFENRGIKLGHGVWDLVFEKK 239


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 480,481
Number of extensions: 19826
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 160
Effective length of database: 740,042
Effective search space: 118406720
Effective search space used: 118406720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)