BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0484.p (615 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095872|ref|YP_001100947.1| ATP-dependent DNA helicase [Her... 1018 0.0 gi|134095351|ref|YP_001100426.1| ATP-dependent RNA helicase [Her... 61 1e-10 gi|134095506|ref|YP_001100581.1| ATP-dependent RNA helicase [Her... 60 4e-10 gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Her... 58 1e-09 >gi|134095872|ref|YP_001100947.1| ATP-dependent DNA helicase [Herminiimonas arsenicoxydans] Length = 608 Score = 1018 bits (2633), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/598 (80%), Positives = 540/598 (90%), Gaps = 1/598 (0%) Query: 16 RALHVLETVFGYSSFRGHQGEIVQHVAAGGDALVLMPTGGGKSLCYQVPALLREGTGVVV 75 +ALHVLE+VFGYSSFRG Q EIV V GGDALVLMPTGGGKSLCYQ+P+LLR+G GVV+ Sbjct: 11 QALHVLESVFGYSSFRGEQAEIVDLVTRGGDALVLMPTGGGKSLCYQIPSLLRDGVGVVI 70 Query: 76 SPLIALMQDQVDALAEVGVRAAFLNSTQSFDEALQIERRLRQGDLDVLYVAPERLMTPRC 135 SPLIALMQDQVDALAEVGVRAAFLNSTQ+F+E+ +IERRLR GDLD++YVAPERLMTPRC Sbjct: 71 SPLIALMQDQVDALAEVGVRAAFLNSTQTFEESSRIERRLRSGDLDLVYVAPERLMTPRC 130 Query: 136 LDLLESARIALFAIDEAHCVSQWGHDFRPEYIKLSILHERFPQVPRIALTATADQQTREE 195 LDLLE+++IALFAIDEAHCVSQWGHDFRPEYI+LSILHERFP VPRIALTATAD QTREE Sbjct: 131 LDLLEASKIALFAIDEAHCVSQWGHDFRPEYIRLSILHERFPNVPRIALTATADHQTREE 190 Query: 196 IIHRLQLEDARQFVSSFDRPNIRYQIVEKANGRKQLLDFIKSEHPEDAGIVYCLSRKKVE 255 I HRLQL++AR FVSSFDRPNIRYQIVEKANGRKQ+LDFI+SEH DAGIVYCLSRKKVE Sbjct: 191 IAHRLQLDNARMFVSSFDRPNIRYQIVEKANGRKQVLDFIESEHAGDAGIVYCLSRKKVE 250 Query: 256 ETAEFLRGEGINALAYHAGMDYALRTKNQARFLREDKIVMVATIAFGMGIDKPDVRFVCH 315 ETAEFLR GI+AL YHAGMD+A R+KNQARFLRE+ IVMVATIAFGMGIDKPDVRFV H Sbjct: 251 ETAEFLRENGISALPYHAGMDFATRSKNQARFLREESIVMVATIAFGMGIDKPDVRFVAH 310 Query: 316 LDLPKSVEGYYQETGRAGRDGLPADAWMAYGLQDVVQQRRMIDESEADETFKRVLGTKLD 375 LDLPKS+EGYYQETGRAGRDG A+AWMAYGLQDVVQQRRMIDESEADETFKRV G KLD Sbjct: 311 LDLPKSIEGYYQETGRAGRDGAAANAWMAYGLQDVVQQRRMIDESEADETFKRVQGVKLD 370 Query: 376 AMLSLCETLHCRRVHLLDYFGEKSSPCGNCDTCLTPPVSFDATVEVQKLLSTVYRVEQRF 435 AML LCETLHCRR LL YFG+ S+PCGNCDTCL PP SFDATV VQKLLST+YRV+QRF Sbjct: 371 AMLGLCETLHCRRQRLLTYFGQSSAPCGNCDTCLNPPRSFDATVAVQKLLSTIYRVDQRF 430 Query: 436 APGHVIEVLRGIDGERVKQWRHDQLSVFGVGSDRGEAEWRAILRQVIALGLLTVDAENYS 495 HV++VLRG+D ++VKQW+HDQ+S FG+GSDR EAEWRAILRQ IALGL+ VD E YS Sbjct: 431 GAMHVLDVLRGVDSDKVKQWQHDQVSTFGIGSDRSEAEWRAILRQSIALGLVAVDHEAYS 490 Query: 496 ALKLTEAARPVLRGEQQVQLRRYRKPEKAKRSSQR-SSFVETDLNSEEQALFEKLRWWRM 554 ALKLT+AARPVL+G ++VQLR Y+KP K++R+S + F+ETDL++EEQA+FEKLRWWRM Sbjct: 491 ALKLTDAARPVLKGGEKVQLREYQKPVKSRRTSSKPKGFIETDLSAEEQAIFEKLRWWRM 550 Query: 555 ETARAHNVPAYVIFHDATMREIAKARPQSLDELRHVTGVGEKKLETYGAQIIELIAQM 612 ETAR HNVPAYVIF+DATMREIAK +P +L +LR V+GVGEKKLE+YGA I+ LIA M Sbjct: 551 ETARTHNVPAYVIFNDATMREIAKTQPATLADLRGVSGVGEKKLESYGADIVALIAAM 608 >gi|134095351|ref|YP_001100426.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 449 Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 86/348 (24%), Positives = 136/348 (39%), Gaps = 45/348 (12%) Query: 23 TVFGYSSFRGHQGEIVQHVAAGGDALVLMPTGGGKSLCYQVPALLREGT----------- 71 T GYS Q + + V AGGD L TG GK+ + +P L R T Sbjct: 17 TEHGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPILHRLATSGTPHASASAQ 76 Query: 72 ----GVVVSPLIALMQDQVDALAEVGVRAAFLNSTQSFDE-ALQIERRLRQGDLDVLYVA 126 +V++P L QV+ + LNS F + + +L + +D+L Sbjct: 77 RPIRALVLTPTRELAA-QVEESVRTYSKYLNLNSAVIFGGVGINPQIKLLKHGVDILVAT 135 Query: 127 PERLMTPRCLDLLESARIALFAIDEAHCVSQWG--HDFR------PEYIKLSILHERFPQ 178 P RL+ + +++ + +DEA + G D R P+ + + F Sbjct: 136 PGRLLDHMQQGTVNLSKVEILVLDEADRMLDMGFIKDIRRVLAVLPKNRQNLLFSATFSN 195 Query: 179 VPRIALTATADQQTREEIIHRLQ-LEDARQFVSSFDR----PNIRYQIVEKANGRKQLLD 233 + + E+ R +E Q + DR P + + I K N Q+L Sbjct: 196 EIKALADGLLNSPAMIEVARRNSTVEVIEQKIHPVDRDKKHPMLAHLI--KTNNWSQVLV 253 Query: 234 FIKSEHPEDAGIVYCLSRKKVEETAEFLRGEGINALAYHAGMDYALRTKNQARFLREDKI 293 F +++H + K VE+ L +GI+ +A H + RT+ + F Sbjct: 254 FTRTKHGAN---------KLVEQ----LEKDGISGMAIHGNKSQSARTRALSEFKDGSLQ 300 Query: 294 VMVATIAFGMGIDKPDVRFVCHLDLPKSVEGYYQETGRAGRDGLPADA 341 V+VAT GID + V + DLP E Y GR GR G +A Sbjct: 301 VLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEA 348 >gi|134095506|ref|YP_001100581.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 468 Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 88/358 (24%), Positives = 139/358 (38%), Gaps = 48/358 (13%) Query: 23 TVFGYSSFRGHQGEIVQHVAAGGDALVLMPTGGGKSLCYQVPALLR----------EGTG 72 T GY++ G Q + + G D +V TG GK+ + +PAL + EG Sbjct: 17 TESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPALHKFAVQSEQQQPEGGR 76 Query: 73 VVVS-----------PLIALMQDQVDALAEVGVRAAFLNSTQSFDEALQIERRLRQ---- 117 P Q ++ L R L T S D+ +R++ Sbjct: 77 TPNQEAQSARSRGDRPRFKAAQPKMLVLTPT--RELALQVTTSTDKYGAFMKRVKAVSIL 134 Query: 118 ------GDLDVLYVAPERLM-TP-RCLDLLESARI-----ALFAIDEAHCVSQWGHDFRP 164 + +L PE L+ TP R +D +ES +I + +DEA + G Sbjct: 135 GGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSELQILVLDEADRMLDMGFIDDI 194 Query: 165 EYIKLSILHERFPQVPRIALTATADQQTREEIIHRLQLEDARQFVSSFDRPNIRYQI--V 222 E I + R + L T + L ++ A S+ NI+ + V Sbjct: 195 EKIVAATPEGRQTMLFSATLDGTVGTMAKRITKDPLVIQIAG---SATKHENIKQGVHFV 251 Query: 223 EKANGRKQLLDFIKSEHPEDAGIVYCLSRKKVEETAEFLRGEGINALAYHAGMDYALRTK 282 + + + +LLD + + D +V+ +++ + A+ L G A A H M R + Sbjct: 252 DDLSHKNRLLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHGDMHQGARNR 311 Query: 283 NQARFLREDKIVMVATIAFGMGIDKPDVRFVCHLDLPKSVEGYYQ---ETGRAGRDGL 337 R V+VAT GID P + V + DLPK E Y TGRAGR+G+ Sbjct: 312 TLDGLRRGQIRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGI 369 >gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 502 Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 81/349 (23%), Positives = 136/349 (38%), Gaps = 38/349 (10%) Query: 26 GYSSFRGHQGEIVQHVAAGGDALVLMPTGGGKSLCYQVP------ALLREGTGVVVSPLI 79 GY Q E + V G D + TG GK+ + +P A P+ Sbjct: 42 GYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSLPIIQLLMAHANSSASPARHPVR 101 Query: 80 AL-------MQDQVDALAEVGVRAAFLNSTQSFDEA-LQIERRLRQGDLDVLYVAPERLM 131 AL + DQV A + R L S F + + +G ++++ P RL+ Sbjct: 102 ALILTPTRELADQVAANVKAYSRHTPLRSLVVFGGMDMTPQTAALRGGVEIVIATPGRLL 161 Query: 132 TPRCLDLLESARIALFAIDEAHCVSQWGHDFRPEYIKLSILHER-----------FPQVP 180 + ++ + +DEA + G F P+ ++ L + P++ Sbjct: 162 DHVQQKTINLSQTQILVMDEADRMLDMG--FLPDLQRIINLLPKQRQNLMFSATFSPEIK 219 Query: 181 RIALTATADQQTREEIIHRLQLEDARQFVSSFDRPNIRYQIVEKANGRKQLLDFIKSEHP 240 ++A T D T +E AR ++ + I Y++ E+A ++ + FI E Sbjct: 220 KLAATFLKDPVT---------IEVARSNATAENVTQIIYKVEEEA--KRDAVSFIIRERG 268 Query: 241 EDAGIVYCLSRKKVEETAEFLRGEGINALAYHAGMDYALRTKNQARFLREDKIVMVATIA 300 IV+ ++ A L EG+ A A H + R + +F V+VAT Sbjct: 269 LKQVIVFSNTKIGASRLARQLESEGVKASAIHGDKSQSERMQALEQFKNGTIEVLVATDV 328 Query: 301 FGMGIDKPDVRFVCHLDLPKSVEGYYQETGRAGRDGLPADAWMAYGLQD 349 G+D ++ V + DLP + E Y GR GR G DA + +D Sbjct: 329 AARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLFSDKD 377 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,172,632 Number of extensions: 49546 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 4 Length of query: 615 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 528 Effective length of database: 713,682 Effective search space: 376824096 Effective search space used: 376824096 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)