BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0481.p
         (119 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095158|ref|YP_001100233.1| arsenate reductase [Herminiimon...   154   8e-40
gi|134093764|ref|YP_001098839.1| arsenate reductase [Herminiimon...   132   3e-33
gi|134096337|ref|YP_001101412.1| hypothetical protein HEAR3183 [...    72   9e-15

>gi|134095158|ref|YP_001100233.1| arsenate reductase [Herminiimonas
           arsenicoxydans]
          Length = 140

 Score =  154 bits (390), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 85/116 (73%)

Query: 4   SSITIYHNPKCGTSRNVLQGLRDGGVEPTIIEYLKNPPDRATLTGLIAAMGVPVREVVRS 63
           S ITIYHNP CGTSRNVL  +R+ G EP +IEYLK PPDR  L  LIAAMG+PVR V+R 
Sbjct: 2   SHITIYHNPDCGTSRNVLSLIRNSGEEPAVIEYLKTPPDRDMLKALIAAMGIPVRAVLRE 61

Query: 64  KEALYQELGLDAATVSDEQLIDAMLAHPVLINRPIVVTPKGTMLVRPSERLAEIFP 119
           K   Y ELGL     SDEQLID ML HP+LINRPIVVTP GT L RPSE + +I P
Sbjct: 62  KGTPYAELGLGDQKWSDEQLIDFMLQHPILINRPIVVTPLGTRLCRPSETVLDILP 117


>gi|134093764|ref|YP_001098839.1| arsenate reductase [Herminiimonas
           arsenicoxydans]
          Length = 142

 Score =  132 bits (333), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 64/112 (57%), Positives = 79/112 (70%)

Query: 7   TIYHNPKCGTSRNVLQGLRDGGVEPTIIEYLKNPPDRATLTGLIAAMGVPVREVVRSKEA 66
           TIYHNP CGTSRN L  +R+ G EPT+IEYLK PP R  L  +I+  G+ VRE +R K  
Sbjct: 3   TIYHNPACGTSRNTLALIRNTGEEPTVIEYLKTPPSRVILIQMISDAGLSVREAIRQKGT 62

Query: 67  LYQELGLDAATVSDEQLIDAMLAHPVLINRPIVVTPKGTMLVRPSERLAEIF 118
            Y ELGLD   +SD+ LI+AMLA+P+LINRP VV  KGT L RPSE + ++ 
Sbjct: 63  PYAELGLDNPQLSDDALIEAMLANPILINRPFVVADKGTRLCRPSELVLDVL 114


>gi|134096337|ref|YP_001101412.1| hypothetical protein HEAR3183
           [Herminiimonas arsenicoxydans]
          Length = 154

 Score = 72.0 bits (175), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 10/117 (8%)

Query: 6   ITIYHNPKCGTSRNVLQGLRD----GGVEPTIIEYLKNPPDRATLTGL----IAAMGVPV 57
           + IYHNP+C  SR  L+ ++       ++  I++Y K P D   LT L     A     V
Sbjct: 33  LIIYHNPRCSKSRGALEQVQQFATQNQLDLNIVDYQKTPLDLMQLTELHQLLQADTTCSV 92

Query: 58  REVVRSKEALYQELGLDAATVSDEQLIDAMLAHPVLINRPIVVTPKGTMLVRPSERL 114
           R++VR  EAL+  L L  A   D+ L+ A+ AHP L+ RPIV      ++ RP E L
Sbjct: 93  RDMVRDNEALFDTLSLQQA--DDDSLLQALAAHPQLLQRPIVRFNNRALIARPPELL 147


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 221,656
Number of extensions: 8259
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 3
Length of query: 119
Length of database: 1,000,347
Length adjustment: 71
Effective length of query: 48
Effective length of database: 766,402
Effective search space: 36787296
Effective search space used: 36787296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)