BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0480.p
         (92 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095874|ref|YP_001100949.1| hypothetical protein HEAR2707 [...   113   2e-27

>gi|134095874|ref|YP_001100949.1| hypothetical protein HEAR2707
          [Herminiimonas arsenicoxydans]
          Length = 87

 Score =  113 bits (283), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 64/83 (77%)

Query: 1  MKCRDACGACCIAPSITSPLPGMPHGKPANVPCVQLGQDMRCQIFGQPQRPAFCAGLQPS 60
          + CR  CGACC APSI+S +PGMP+GKPA V CVQL  D RC+IFGQP+RP  C+ LQP 
Sbjct: 4  LNCRPDCGACCTAPSISSAIPGMPNGKPAGVRCVQLADDYRCRIFGQPERPLVCSSLQPQ 63

Query: 61 REMCGDSRTQAITWLTELEQLTA 83
          REMCG +R +A+ +L  LE+LTA
Sbjct: 64 REMCGATREEAMIYLMTLERLTA 86


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 192,178
Number of extensions: 6712
Number of successful extensions: 8
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 92
Length of database: 1,000,347
Length adjustment: 61
Effective length of query: 31
Effective length of database: 799,352
Effective search space: 24779912
Effective search space used: 24779912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 121 (51.2 bits)