BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0478.p
         (221 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095875|ref|YP_001100950.1| protein-L-isoaspartate O-methyl...   305   2e-84
gi|134094482|ref|YP_001099557.1| putative L-isoaspartate O-methy...    81   3e-17

>gi|134095875|ref|YP_001100950.1| protein-L-isoaspartate
           O-methyltransferase [Herminiimonas arsenicoxydans]
          Length = 218

 Score =  305 bits (780), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 147/221 (66%), Positives = 179/221 (80%), Gaps = 3/221 (1%)

Query: 1   MNIEQARFNMIEQQIRPWNVLAQDVLDLLMVVKREEFVPAAYRSLAFFDTEIPLPGGENM 60
           MNIE+ARF MIEQQIRPW+VL QDVL+LL++VKRE FVP AYR+LAF D+EIPLP GE+M
Sbjct: 1   MNIEKARFLMIEQQIRPWDVLDQDVLELLVIVKREAFVPLAYRALAFADSEIPLPHGEHM 60

Query: 61  LAPKIEARILQEANVKKHEYVLEIGAGSGYMAALLAHKARHVTTVEISPELKALAAQNLS 120
           + PK+EARILQE  +KKHE VLEIGAGSGYMAALLA+KARHVTT+EI PELKALA QNL+
Sbjct: 61  MTPKLEARILQELALKKHENVLEIGAGSGYMAALLAYKARHVTTLEIEPELKALAQQNLA 120

Query: 121 DYGVANVDVQLGNGAQGWNGADGKPAEYDVIVISGSLPVLPDAFGKQLKIGGRLLAIVGS 180
           +YGV+NVDV   +GAQG+  A+     YDVIV+SGSLP++P+    Q+K+GGR+  IVG 
Sbjct: 121 NYGVSNVDVVEADGAQGYTAAN---TTYDVIVVSGSLPIVPETLLAQIKVGGRMFVIVGD 177

Query: 181 APVMELQLITRTSEHVFETVNIVETLAKPLHAALTPSHFTF 221
           APVM  Q+ITR S+  + TVN+ ET+ KPL   + PSHF F
Sbjct: 178 APVMTAQIITRVSDISYNTVNLFETVVKPLRNVVVPSHFKF 218


>gi|134094482|ref|YP_001099557.1| putative L-isoaspartate
           O-methyltransferase [Herminiimonas arsenicoxydans]
          Length = 288

 Score = 81.3 bits (199), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 99/195 (50%), Gaps = 9/195 (4%)

Query: 20  VLAQDVLDLLMVVKREEFVPAAYRSLAFFDTEIPLPGGENMLAPKIEARILQ----EANV 75
           V    VL  +  V R  F+  A  S A+ D  +P+   + +  P I AR+++     +N 
Sbjct: 93  VTDSKVLAAMEAVPRHLFMEPALASQAYIDASLPIGYHQTISQPYIVARMIEVMRNNSNA 152

Query: 76  KKHEYVLEIGAGSGYMAALLAHKARHVTTVEISPELKALAAQNLSDYGVANVDVQLGNGA 135
                VLEIG G GY AA+L+  A+ V ++E    L  LA  NL    VAN+ +  G+G 
Sbjct: 153 GVLNCVLEIGTGCGYQAAVLSLVAKEVYSIERIKGLHELAKSNLRPMRVANIRLHYGDGM 212

Query: 136 QGWNGADGKPAEYDVIVISGSLPVLPDAFGKQLKIGGRLLAIVGSAPVMELQLITRTSEH 195
            G   A    A +D I+++ +   +P A  +QL IGGRL+A VG    + LQLI R S+ 
Sbjct: 213 LGLPQA----APFDGIILAAAGLEVPQALLEQLTIGGRLVAPVGDRHQV-LQLIERVSKF 267

Query: 196 VFETVNIVETLAKPL 210
            +++  + +    PL
Sbjct: 268 EWKSSTLEDCHFVPL 282


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 437,981
Number of extensions: 18725
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 221
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 143
Effective length of database: 743,337
Effective search space: 106297191
Effective search space used: 106297191
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)