BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0476.p
         (214 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095878|ref|YP_001100953.1| multidrug efflux pump transcrip...   216   5e-58

>gi|134095878|ref|YP_001100953.1| multidrug efflux pump
           transcriptional repressor [Herminiimonas arsenicoxydans]
          Length = 212

 Score =  216 bits (551), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 107/209 (51%), Positives = 141/209 (67%)

Query: 1   MARSTKEEALETRARILDAAEQVFHQRGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60
           MAR TKEEALETR+RI+DAAE+VFH RG++Q++L+DVA AA+VTRGAIYWHFKNK DLFD
Sbjct: 1   MARCTKEEALETRSRIIDAAEEVFHARGLAQSTLSDVALAADVTRGAIYWHFKNKGDLFD 60

Query: 61  AMCERVRLPMEAVLEENASPQLEDPLGQFLRSGIYVLTMAATDERCRRVFDIIFNKCEFA 120
           AMCERVRLP+E++          +PLG    + +  +    +D R R+V DIIF + E  
Sbjct: 61  AMCERVRLPLESLAATPFEQYAHNPLGHLRNTWVAFMKNVVSDTRSRKVLDIIFLRSELV 120

Query: 121 DAHDPILIRQRECHVDGLLRLEQILMNAVARGQLPATLDIRLACLAAHATFSGLLTDWFF 180
           D  DPI +RQ+ C+  GL  +E+IL  AVA  QLP  LD RLA ++ H+   GLL +W F
Sbjct: 121 DRDDPIWVRQQHCYEKGLDNMERILKEAVALDQLPKDLDTRLAAISLHSHVIGLLMNWLF 180

Query: 181 SPDSFDLVKDGERILAASLYALKTAPSLQ 209
           SP SF L +    ++   L +L  A S++
Sbjct: 181 SPGSFALAEVAPAVIDGCLESLACATSMR 209


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 372,078
Number of extensions: 13981
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 136
Effective length of database: 743,337
Effective search space: 101093832
Effective search space used: 101093832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)