BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0473.p (483 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095881|ref|YP_001100956.1| outer membrane transport protei... 588 e-169 gi|134095761|ref|YP_001100836.1| putative outer membrane transpo... 406 e-114 gi|134095560|ref|YP_001100635.1| outer membrane transport protei... 337 9e-94 gi|134095533|ref|YP_001100608.1| putative RND efflux system, out... 171 5e-44 gi|134094170|ref|YP_001099245.1| putative outer membrane protein... 159 4e-40 >gi|134095881|ref|YP_001100956.1| outer membrane transport protein involved in copper (silver) tolerance [Herminiimonas arsenicoxydans] Length = 474 Score = 588 bits (1516), Expect = e-169, Method: Compositional matrix adjust. Identities = 313/471 (66%), Positives = 369/471 (78%), Gaps = 2/471 (0%) Query: 14 QLCAALMVAGVLGGCSLAPTYERPQAPVESAYPADAAGRAELQ-AVNLGWRQFFPDQRLQ 72 QL ++ A VL CS+AP Y RP APV + YPA +A + Q A GWR FFPDQRLQ Sbjct: 4 QLTLTVLAASVLSACSMAPKYTRPDAPVAADYPAASAAADKQQRAHETGWRNFFPDQRLQ 63 Query: 73 QLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNIAGSAARTRTPASQSLTGQPV 132 LI AAL NNRDLR A L IEEARAQY I ADLLPNLN + +R RTPAS S TG Sbjct: 64 ALIGAALANNRDLRVAALRIEEARAQYNIQSADLLPNLNGTFTGSRARTPASISPTGIDS 123 Query: 133 ISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLVAQVAQAYLSERS 192 +S++YQVGL++ ++ELDFFGRV +L DAALASYL+TEEAQ++A ISLVA+VA+AYL+ER+ Sbjct: 124 VSSAYQVGLSLASFELDFFGRVHSLNDAALASYLATEEAQRAAHISLVAEVAKAYLAERA 183 Query: 193 YAEQLQLANDTLKSREDNLELARKRFDVGASSALDFRLTQTLVESARVAKAQLERQRAQA 252 +AEQL LA TLKSR +LA++RF+VGASSALD R + L++SARVA+ L RQRAQA Sbjct: 184 FAEQLALAQSTLKSRGTAYDLAKQRFEVGASSALDLRQNEALLQSARVAQVTLARQRAQA 243 Query: 253 ENALTLLVGKKVGDLPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSAEQSLLAANANIG 312 NALTLLVG+ + P AQ LS + IVTDIPAGLPSDLLT RPDIRSAEQSLLAANANIG Sbjct: 244 LNALTLLVGQPLTGFPEAQPLSAQNIVTDIPAGLPSDLLTQRPDIRSAEQSLLAANANIG 303 Query: 313 AARAAFFPRISLTGNFGSASSTLGNLFESGSGAWSFGPSLSLPIFDFGRNSANLDLAEVR 372 AARAAFFPRISLT G+ASSTL NLF+SG+ AW+F P L LPIFD GRNSANL L+EVR Sbjct: 304 AARAAFFPRISLTAGIGTASSTLSNLFDSGTRAWTFAPQLVLPIFDAGRNSANLTLSEVR 363 Query: 373 KNQAVVTYEKTIQTAFREVADALVARGTLDDQVKAQEAFLAAQQERLKLTDLRFKNGIAS 432 KN A+ YEK+IQ+AFREV+DALVAR L++Q+ AQ AQ ERLKL D RF+NGIAS Sbjct: 364 KNIAIANYEKSIQSAFREVSDALVARDLLEEQIDAQRRVQEAQAERLKLADQRFQNGIAS 423 Query: 433 SLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGGINE-NTVSVAAK 482 SLD LDAQR+LFSA+Q L+QAR LRL NAIDLY++LGGG+ E N+V+ K Sbjct: 424 SLDVLDAQRELFSAEQDLVQARLLRLTNAIDLYRSLGGGLTESNSVAATTK 474 >gi|134095761|ref|YP_001100836.1| putative outer membrane transport protein involved in copper (silver) tolerance (cusC) [Herminiimonas arsenicoxydans] Length = 502 Score = 406 bits (1044), Expect = e-114, Method: Compositional matrix adjust. Identities = 222/428 (51%), Positives = 294/428 (68%), Gaps = 3/428 (0%) Query: 45 YPADAAGRAELQAVNLGWRQFFPDQRLQQLIAAALENNRDLRTAVLNIEEARAQYQIARA 104 YP+D + A +GWR +F D RLQ LIA ALENNRDLR AVL +EEARA Y I RA Sbjct: 50 YPSDV-NQDGAAAAAMGWRDYFTDARLQDLIAQALENNRDLRAAVLRVEEARAAYGIQRA 108 Query: 105 DLLPNLNIAGSAARTRTPASQSLTGQPVISNSYQVGLAVPAYELDFFGRVRNLKDAALAS 164 + P + + R PA SLTG+P +S+ Y V L + ++E+DF+GRVR+L+DAAL + Sbjct: 109 EQFPAIAAQAGSERAHVPADLSLTGKPAMSSQYHVSLGLASWEIDFWGRVRSLRDAALEN 168 Query: 165 YLSTEEAQKSAQISLVAQVAQAYLSERSYAEQLQLANDTLKSREDNLELARKRFDVGASS 224 YL+++EA+++ ISLVAQVA +YL+ E++ LA T+ SRE++L + +R +VG++S Sbjct: 169 YLASDEARRAVTISLVAQVANSYLALCELDERIALARLTIASREESLRIFTRRVEVGSTS 228 Query: 225 ALDFRLTQTLVESARVAKAQLERQRAQAENALTLLVGKKVGDLPPAQLLSDEK-IVTDIP 283 L+ QTL+ A+ AQLE+ RA NAL LLVG + +LP DE+ ++ + Sbjct: 229 RLNLTQVQTLLSQAQALGAQLEQARALQANALILLVGVTL-ELPATSSRLDERQMLLPLQ 287 Query: 284 AGLPSDLLTNRPDIRSAEQSLLAANANIGAARAAFFPRISLTGNFGSASSTLGNLFESGS 343 GLPSDLL RPDI +AE L AA+A IGAARAAFFPRI+LTG+FG+AS+ L LF +GS Sbjct: 288 PGLPSDLLIRRPDIVAAEHQLKAAHAQIGAARAAFFPRIALTGSFGTASAELDGLFAAGS 347 Query: 344 GAWSFGPSLSLPIFDFGRNSANLDLAEVRKNQAVVTYEKTIQTAFREVADALVARGTLDD 403 AW+F PS+SLP+FD GR S NL LAE R++ AV YEKTIQ AFR+VADAL AR L Sbjct: 348 RAWTFAPSISLPLFDAGRRSNNLSLAEARRDLAVANYEKTIQAAFRDVADALAARQWLAQ 407 Query: 404 QVKAQEAFLAAQQERLKLTDLRFKNGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAID 463 Q+ +A L Q ER +L+ LR+ NG A+ LD LDAQRDL A+Q L+Q R+ L++ + Sbjct: 408 QLLIAQAALTTQTERARLSQLRYDNGAAAYLDVLDAQRDLLVAEQQLVQIRRALLSSQVS 467 Query: 464 LYKALGGG 471 LY ALGGG Sbjct: 468 LYAALGGG 475 >gi|134095560|ref|YP_001100635.1| outer membrane transport protein involved toxic tolerance [Herminiimonas arsenicoxydans] Length = 476 Score = 337 bits (863), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 208/474 (43%), Positives = 271/474 (57%), Gaps = 23/474 (4%) Query: 18 ALMVAGVLGGCS-LAPTYERPQAPVESAYP-------------ADAAGRAELQAVNLGWR 63 AL + + GC+ L P + A + +A+P AD + E A ++GWR Sbjct: 10 ALAITLAVSGCAMLEPQLPKADAAIPAAWPLPPNTAAAGQNVTADTSATKEQAAADIGWR 69 Query: 64 QFFPDQRLQQLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNIAGSAARTRTPA 123 FF D +L++LIA AL NNRDLR AVLN+E ARAQYQI A+ P L+ GS AR R+ Sbjct: 70 DFFVDPKLEELIARALHNNRDLRVAVLNVERARAQYQIQNAERFPALD--GSVARNRS-- 125 Query: 124 SQSLTGQPVISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLVAQV 183 G V Y ++ELD FGR+ NL AAL Y + EE Q+SAQ+SL+A++ Sbjct: 126 ----GGNVVNPGDYYSAALSASFELDLFGRIHNLSQAALEQYFAQEEGQRSAQLSLIAEI 181 Query: 184 AQAYLSERSYAEQLQLANDTLKSREDNLELARKRFDVGASSALDFRLTQTLVESARVAKA 243 A YL+ + E ++A T +++ +L KR GA S LD QT +E+AR A Sbjct: 182 ANTYLTFAADLESQRIAQATFDNQQIAYDLVVKRHRAGAVSGLDLSQAQTTIETARADVA 241 Query: 244 QLERQRAQAENALTLLVGKKVGD-LPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSAEQ 302 + A NALTLLVG V D L P + +PA LPS +L RPD+R E Sbjct: 242 RYAGLVATDRNALTLLVGAPVEDSLLPQGFDLKVSGIAPLPAQLPSQVLLRRPDVRQTEH 301 Query: 303 SLLAANANIGAARAAFFPRISLTGNFGSASSTLGNLFESGSGAWSFGPSLSLPIFDFGRN 362 L ANANIGAARAAFFP ISLTG+ GSAS+ L LF+SG+ WSF P +SLPIF G Sbjct: 302 VLRGANANIGAARAAFFPSISLTGSVGSASNQLSGLFDSGTKFWSFVPQISLPIFHGGAL 361 Query: 363 SANLDLAEVRKNQAVVTYEKTIQTAFREVADALVARGTLDDQVKAQEAFLAAQQERLKLT 422 ANL +A ++ A+ YEK IQ+ FREVADAL TL + +AQ+A L A L+ Sbjct: 362 RANLGVATADRDIALARYEKAIQSGFREVADALALTSTLAQRRQAQQALLDAASRAYDLS 421 Query: 423 DLRFKNGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGGINENT 476 R++ G S L LDAQR ++AQQ+L+ A+ N + LYK LGGG E T Sbjct: 422 KARYQYGRDSFLILLDAQRTFYTAQQSLVAAQLAEQGNRVTLYKVLGGGWEEGT 475 >gi|134095533|ref|YP_001100608.1| putative RND efflux system, outer membrane lipoprotein, NodT [Herminiimonas arsenicoxydans] Length = 499 Score = 171 bits (434), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 138/473 (29%), Positives = 228/473 (48%), Gaps = 18/473 (3%) Query: 16 CAALMVAGVL---GGCSLAPTYERPQAPVESAYP--------ADAAGRAEL----QAVNL 60 C L+V ++ C++ P Y R P E+AY AD G A+ A++ Sbjct: 8 CRYLIVVTLIQLISACTVGPDYIRQPPPTETAYTKKDPIVTTADNNGNAQRFHTDAAISA 67 Query: 61 GWRQFFPDQRLQQLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNIAGSAARTR 120 W F L + + +L NN L+ A +++E++ Q P + + SA R Sbjct: 68 DWWNLFHSADLGEAVDRSLRNNASLQAAQASLKESQHNLQAGYGVFFPQIGGSFSATRQL 127 Query: 121 TPASQSLTGQPV-ISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISL 179 A + + PV I N + +G A+ +Y LD FG R + +A A + + ++L Sbjct: 128 PSAFRFGSASPVGIFNLFTLGAAI-SYTLDIFGGERRMVEALGAQADYQKYVALATYLTL 186 Query: 180 VAQVAQAYLSERSYAEQLQLANDTLKSREDNLELARKRFDVGASSALDFRLTQTLVESAR 239 V ++ +Y Q + + +++ L +A + G + ++L+ S++ Sbjct: 187 SGNVVNTAIARAAYHAQYEATQQLILRQQEQLAVAENQAAHGIAPYATVLSLRSLLASSQ 246 Query: 240 VAKAQLERQRAQAENALTLLVGKKV-GDLPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIR 298 A A + ++R QA++ L L G G + L+ ++ D+P LPS+L+ RPD+ Sbjct: 247 AALAVVAQKRDQADHLLANLQGTTASGTYTSSFDLAQLELPQDLPLTLPSELVRQRPDVL 306 Query: 299 SAEQSLLAANANIGAARAAFFPRISLTGNFGSASSTLGNLFESGSGAWSFGPSLSLPIFD 358 +AE L A+A +G A AA FP SL N+ ++ LGNL +S S WS G + +PIF Sbjct: 307 AAEAQLHVASAGVGVATAALFPSFSLGANYALGNTKLGNLSDSSSKFWSVGSGVDVPIFQ 366 Query: 359 FGRNSANLDLAEVRKNQAVVTYEKTIQTAFREVADALVARGTLDDQVKAQEAFLAAQQER 418 G A+ QA+ Y +T+ +AF++VAD L A VKAQ L A ++ Sbjct: 367 GGTAWHKRRAAQDAYQQALANYRQTVLSAFQQVADVLTAIEHDAQAVKAQAESLGAAEQT 426 Query: 419 LKLTDLRFKNGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGG 471 LKL ++ ++ G+ S LD L A + ++ A +QA LR + L+ ALGGG Sbjct: 427 LKLIEVNYRAGLVSYLDVLAANTQFYQSKIAYLQALGLRYQDTTALFVALGGG 479 >gi|134094170|ref|YP_001099245.1| putative outer membrane protein [Herminiimonas arsenicoxydans] Length = 469 Score = 159 bits (401), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 154/466 (33%), Positives = 229/466 (49%), Gaps = 10/466 (2%) Query: 11 RLLQLCAALMVAGVLGGCSLAPTYERPQAPVESAYPADAAGRAELQAVNLGWRQFFPDQR 70 R L A+ V + GC+ +P + + + A ELQ W + F Sbjct: 8 RRTHLALAVAVLFAVSGCAHNIDASKPNVEIPATWAEVAPAGIELQR---DWWRGFGSNE 64 Query: 71 LQQLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNIAGSAARTRTPASQSLTGQ 130 L LI +L + DL A + +A A A L P L ++ + + +G Sbjct: 65 LSALIDQSLAGSPDLIIAAERVTQAEITASSAGASLFPLLTVSAGTDTGQVKPGPTGSGW 124 Query: 131 PVISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLVAQVAQAYLSE 190 S S V L+V YE+D +GRV +A AS ++ ++ +++L VA AY Sbjct: 125 -ARSESTGVALSVN-YEVDVWGRVAATTRSANASLNASRYDLETVRLTLTTGVANAYFQT 182 Query: 191 RSYAEQLQLANDTLKSREDNLELARKRFDVGASSALDFRLTQTLVESARVAKAQLERQRA 250 + QLQ+A + L E + R+ GA+SALD ++ V + R L+ Q Sbjct: 183 LALRMQLQVAQENLAIAEKLFSIVEARYRFGAASALDVSRQRSTVLAQRATILPLQVQER 242 Query: 251 QAENALTLLVGKKVGDLPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSAEQSLLAANAN 310 Q +AL +L+G++ L A L D + ++ GLPS L+T RPD+ S E LLA +AN Sbjct: 243 QTVSALAILLGRQPQALQVAALSLDTLAIPEVSPGLPSTLITRRPDVASVEAQLLAGSAN 302 Query: 311 IGAARAAFFPRISLTGNFGSASSTLGNLFESGSGAWSFGPSLSLPIFDFGRNSANL--DL 368 + AARAA P ISLTG+ G+AS+ L L G+ A+S G + S+ F NS L + Sbjct: 303 VAAARAALLPTISLTGSAGNASAALLTL---GNPAYSIGIAASIVQTLFDGNSLRLRVET 359 Query: 369 AEVRKNQAVVTYEKTIQTAFREVADALVARGTLDDQVKAQEAFLAAQQERLKLTDLRFKN 428 E + Q +Y +T+ TA +EV DAL +Q +AQ A + L L++LR++ Sbjct: 360 NESTRRQLAESYRRTVYTALKEVDDALGNATRNREQEQAQIAIKKEAERALALSELRYRE 419 Query: 429 GIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGGINE 474 G LDAQR LF+A L Q R LRL D++KALGGG ++ Sbjct: 420 GADDLNSLLDAQRTLFAADDKLTQLRLLRLTGTTDVFKALGGGWSK 465 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.129 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 746,164 Number of extensions: 27410 Number of successful extensions: 183 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 10 Length of query: 483 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 398 Effective length of database: 720,272 Effective search space: 286668256 Effective search space used: 286668256 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)