BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0466.p
         (191 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094381|ref|YP_001099456.1| putative sugar-1-phosphate tran...   273   5e-75
gi|134093959|ref|YP_001099034.1| putative UDP-glucose lipid carr...   107   4e-25

>gi|134094381|ref|YP_001099456.1| putative sugar-1-phosphate
           transferase (partial before start's modification)
           [Herminiimonas arsenicoxydans]
          Length = 186

 Score =  273 bits (697), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 125/185 (67%), Positives = 154/185 (83%)

Query: 7   KRIVDVTGCLVALVLFAIPALLIALAIKLTSKGPVLYWSDRVGRGNCIFRMPKFRTMRTD 66
           KR  D+T  ++A  +  +P  L++L +KLTS+GP++YWSDRVGRGN IF+MPKFRTM+ D
Sbjct: 2   KRTFDLTLAILASFVLLVPIGLVSLFVKLTSQGPIVYWSDRVGRGNKIFKMPKFRTMQID 61

Query: 67  TPQLATHLLTQPQQFLTPIGSFLRRSSLDEIPQLWSILKGDMSLVGPRPALFNQDDLVAK 126
           TP +ATHLL+ P+QFLTPIGSFLRRSSLDE+PQLWSIL+GDMS VGPRPALFNQDDL+A 
Sbjct: 62  TPAVATHLLSNPEQFLTPIGSFLRRSSLDELPQLWSILRGDMSFVGPRPALFNQDDLIAL 121

Query: 127 RTELGVHMLTPGLTGWAQVNGRDDLPIPDKVRFDVEYAHRQSFLFDFRIIILTVIKVFGR 186
           RT  GV  +TPGLTGWAQ+NGRD+LPIP+KV+ DVEY  RQSF FD +II LT +KV  +
Sbjct: 122 RTRYGVDQVTPGLTGWAQINGRDELPIPEKVQLDVEYMQRQSFWFDLKIIFLTFLKVLKK 181

Query: 187 SGVSH 191
            G++H
Sbjct: 182 DGITH 186


>gi|134093959|ref|YP_001099034.1| putative UDP-glucose lipid carrier
           transferase [Herminiimonas arsenicoxydans]
          Length = 454

 Score =  107 bits (267), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 97/172 (56%), Gaps = 8/172 (4%)

Query: 25  PALL-IALAIKLTSKGPVLYWSDRVGRGNCIFRMPKFRTMRTDTPQLATHLLTQPQQFLT 83
           P +L IA+AIK TS GPV++   R G       + KFR+M            T+  Q +T
Sbjct: 281 PVMLGIAIAIKSTSPGPVIFRQRRYGLDGEEIIVYKFRSMTVCEDGAQVVQATRNDQRIT 340

Query: 84  PIGSFLRRSSLDEIPQLWSILKGDMSLVGPRPALFNQDDLVAKRTE--LGVHMLTPGLTG 141
            +G+FLRRSSLDE+PQ +++L+G MS+VGPRP     ++L  K+ +  +  H + PG+TG
Sbjct: 341 RVGAFLRRSSLDELPQFFNVLQGRMSIVGPRPHAVAHNELYRKKIKGYMLRHKVRPGITG 400

Query: 142 WAQVNG-RDDLPIPDK----VRFDVEYAHRQSFLFDFRIIILTVIKVFGRSG 188
           WAQVNG R +    DK    + +D++Y  R S   D  II  TV  V  R  
Sbjct: 401 WAQVNGFRGETDTLDKMEARIAYDLDYLRRWSLALDLWIIARTVGVVLKRDN 452


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.143    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 341,093
Number of extensions: 13528
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 114
Effective length of database: 746,632
Effective search space: 85116048
Effective search space used: 85116048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)