BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0463.p
         (309 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094363|ref|YP_001099438.1| putative UDP-glucose-4-epimeras...    79   2e-16
gi|134094383|ref|YP_001099458.1| dTDP-glucose 4,6 dehydratase [H...    60   1e-10

>gi|134094363|ref|YP_001099438.1| putative UDP-glucose-4-epimerase
           [Herminiimonas arsenicoxydans]
          Length = 309

 Score = 79.3 bits (194), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 138/304 (45%), Gaps = 32/304 (10%)

Query: 14  GMVGSAIVRYLNERGYSNVVVRTH----AELD---------LTRQEAVTAFMESEKPDYV 60
           G +G + + +  E GY N+ V  H    AE D         L+ +EAV   ++  K D V
Sbjct: 10  GFIGQSFIEFALEHGY-NLRVLDHKSCPAEFDGRLTWVQGNLSSEEAVRKVLQ--KSDIV 66

Query: 61  F-LAAAKVGGINANDTYRAEFLYQNLMMECNVIHAAWQAGVQRMLFLGSSCIYPRDCPQP 119
           F   ++ V G  A++      L QN++   +++    Q  V R++F+ S+ +Y      P
Sbjct: 67  FHFISSTVPGDVADEGGE---LIQNVVETLHLLKLCLQEKVSRVVFISSASVYGVQPVLP 123

Query: 120 IREEYLLTGPLEQTNEPYAIAKIAGVKLCESYNRQYGTQYVAAMPTNLYGPNDNYDLNNS 179
           I E   LT P+      + I K++  K  + Y  QYG        +N YGP  +      
Sbjct: 124 IAET-ALTDPISS----HGIHKLSIEKYLQLYKYQYGLDCKIMRLSNPYGPRQSIKGRQG 178

Query: 180 HVLPALIRKAHEAKLRGDTEYVVWGSGKPMREFLYVDDLAAACVHLMESGVSGGLFNIGT 239
            V  AL       K+       + G G  +R+F+Y+ D+ +A   L  + V   +FN+G+
Sbjct: 179 FVAIAL------GKILAGDAISIRGDGSAIRDFIYIADVCSALHLLAITKVKDSVFNVGS 232

Query: 240 GEDITIRELAETVMEVIGFAGKIVFDASKPDGTPRKLLNVDRMK-QAGWSAEVTLREGIR 298
           G+  ++ ++ E + ++        + AS+    P  +L+V R + Q G   + +L +G+ 
Sbjct: 233 GQGYSLNQVVEGMEKITEQRLVTSYVASRFVDIPASVLDVSRAREQLGHVIKYSLEQGLA 292

Query: 299 RSYA 302
            ++A
Sbjct: 293 ETFA 296


>gi|134094383|ref|YP_001099458.1| dTDP-glucose 4,6 dehydratase
           [Herminiimonas arsenicoxydans]
          Length = 367

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 120/289 (41%), Gaps = 41/289 (14%)

Query: 41  DLTRQEAVTAFMESEKPDYVFLAAAKVGGINANDTYRAEFLYQNLMMECNVIHAAWQAGV 100
           D+   + +   + + KP  +   AA+   ++ +    AEF+  N+    +++ AA     
Sbjct: 57  DICDSDKMQELLSTYKPTAIVHFAAE-SHVDRSIHGPAEFVRTNINGTFSLLEAARTYWP 115

Query: 101 Q---------RMLFLGSSCIY----PRDCPQPIREEYLLTGPLEQTNEPYAIAKIAGVKL 147
           Q         R L + +  +Y    P D P      Y         N PY+ +K A   L
Sbjct: 116 QLTSAEKEQFRFLHVSTDEVYGTLGPDDAPFSETTAY-------APNSPYSASKAASDHL 168

Query: 148 CESYNRQYGTQYVAAMPTNLYGPNDNYDLNNSHVLPALIRKAHEAKLRGDTEYVVWGSGK 207
             SY+  YG   +    +N YGP   Y      ++P +I  A   K        ++G G+
Sbjct: 169 VRSYHHTYGLPTLTTNCSNNYGP---YHFPEK-LIPLIIANALAGK-----PLPIYGDGQ 219

Query: 208 PMREFLYVDDLAAACVHLMESGVSGGLFNIGTGEDITIRELAETVMEVI----------G 257
            +R++LYV D   A   ++++G  G  +NIG   +    ++  T+ +++           
Sbjct: 220 QIRDWLYVGDHCTAIRRVLQAGKPGETYNIGGWNEKANLDVVNTLCDMLDALQPNGAGSS 279

Query: 258 FAGKIVFDASKPDGTPRKLLNVDRM-KQAGWSAEVTLREGIRRSYADFL 305
           +  +I + A +P    R  ++  ++ ++ GW    T   GIR++   +L
Sbjct: 280 YRKQITYVADRPGHDRRYAIDARKIERELGWKPAETFDSGIRKTVQWYL 328


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 611,582
Number of extensions: 25537
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 309
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 228
Effective length of database: 733,452
Effective search space: 167227056
Effective search space used: 167227056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)