BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0462.p
         (364 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094383|ref|YP_001099458.1| dTDP-glucose 4,6 dehydratase [H...    81   8e-17

>gi|134094383|ref|YP_001099458.1| dTDP-glucose 4,6 dehydratase
           [Herminiimonas arsenicoxydans]
          Length = 367

 Score = 81.3 bits (199), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 143/343 (41%), Gaps = 31/343 (9%)

Query: 9   LITGVTGQDGS-YLAELLLEKGYEVHGIKRRASSFNTSRIDHLYQDPHERNPRFILHYGD 67
           L+TG  G  GS ++ + L +    V  + +   + N + +  L  D      R I  + D
Sbjct: 3   LVTGGAGFIGSNFVLDWLAQSDEPVVNVDKLTYAGNPNNLASLRDDT-----RHIFVHAD 57

Query: 68  MTDSSSLIRIIQQVQPDEIYNLAAQSHVAVSFEEPEYIANSDALGALRVLEAIR-----I 122
           + DS  +  ++   +P  I + AA+SHV  S   P     ++  G   +LEA R     +
Sbjct: 58  ICDSDKMQELLSTYKPTAIVHFAAESHVDRSIHGPAEFVRTNINGTFSLLEAARTYWPQL 117

Query: 123 LKLEKKT-RFYQASTSELYGLV--QEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYG 179
              EK+  RF   ST E+YG +   + P  ETT + P SPY+ +K  +  +  +Y  +YG
Sbjct: 118 TSAEKEQFRFLHVSTDEVYGTLGPDDAPFSETTAYAPNSPYSASKAASDHLVRSYHHTYG 177

Query: 180 MYACNGILFNHESPVR-GETFVTRKITRALSRIKLGLQECLYLGNLDAKRDWGHAKDYVE 238
           +        N+  P    E  +   I  AL+   L +      G+    RDW +  D+  
Sbjct: 178 LPTLTTNCSNNYGPYHFPEKLIPLIIANALAGKPLPI-----YGDGQQIRDWLYVGDHCT 232

Query: 239 MQWMMLQQETP-EDFVIATGVQYSVREFVDAAAREIDLAITWKGEGVNEKGFDSNGKCIV 297
               +LQ   P E + I    + +  + V+     +D A+   G G + +      K I 
Sbjct: 233 AIRRVLQAGKPGETYNIGGWNEKANLDVVNTLCDMLD-ALQPNGAGSSYR------KQIT 285

Query: 298 AVDPRYFRPAEVETLLGDATKAREKLGWTPKITFQELVSEMMR 340
            V     RP        DA K   +LGW P  TF   + + ++
Sbjct: 286 YVAD---RPGHDRRYAIDARKIERELGWKPAETFDSGIRKTVQ 325


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 675,452
Number of extensions: 26311
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 281
Effective length of database: 726,862
Effective search space: 204248222
Effective search space used: 204248222
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)