BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0455.p (429 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095536|ref|YP_001100611.1| drug ABC transporter ATP-bindin... 80 2e-16 gi|134096229|ref|YP_001101304.1| ABC transporter ATP-binding pro... 78 8e-16 gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter AT... 77 2e-15 gi|134096065|ref|YP_001101140.1| ABC transporter ATP-binding pro... 70 2e-13 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 70 3e-13 >gi|134095536|ref|YP_001100611.1| drug ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 12/185 (6%) Query: 52 GEAVAIIGRNGGGKSTLLEILTGTLSPSSGSVKVNG----RVAALLELGSGFNPE----- 102 GE ++GRNG GK+T++++L L PSSG KV G + AA + G+ P+ Sbjct: 6 GEVFGLLGRNGAGKTTVIKMLATLLEPSSGHAKVGGFDVVQNAARVRRIIGYVPQALSAD 65 Query: 103 --YSGRDNVMLNGLLLGLTREEILGRFSEIEAFAEIGAAIDRPVKTYSSGMLMRLAFAVQ 160 +G +N+ + L + R E R + AF + A VKTYS GM+ RL A Sbjct: 66 GDLTGYENLSIFAKLYDIPRAERKVRIRDALAFMSLSAVSRNLVKTYSGGMIRRLEIAQS 125 Query: 161 VLARPDILIVDEALGVGDFFFQQKCLDYIKRLLAN-GTTLLFVSHDMGTVRDICQRVIYL 219 L P +L +DE D + + +++L A G+ + +H + +C RV + Sbjct: 126 TLHHPRVLFLDEPTVGLDPVARISVWEQLEKLQAQFGSAIFLTTHYLEEAERLCNRVAIM 185 Query: 220 KKGEL 224 +G++ Sbjct: 186 NRGKI 190 >gi|134096229|ref|YP_001101304.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 303 Score = 77.8 bits (190), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 13/202 (6%) Query: 41 ALQDISFNVGRGEAVAIIGRNGGGKSTLLEILTGTLSPSSGSVKVNG-----------RV 89 AL +S + GE ++G NG GK+TL+ IL G +GS+KV+G ++ Sbjct: 18 ALNGVSLAIEEGEFFGLLGPNGAGKTTLISILAGLNRADAGSIKVHGYDVVTDYRQTRKL 77 Query: 90 AALLELGSGFNPEYSGRDNVMLNGLLLGLTREEILGRFSEIEAFAEIGAAIDRPVKTYSS 149 ++ F+P ++ R+ + + GL + E+ ++ D ++ S Sbjct: 78 LGVVPQELVFDPFFTVRETLRMQSGYYGLKNND--AWIDEVMHHLDLTGKADANMRALSG 135 Query: 150 GMLMRLAFAVQVLARPDILIVDEALGVGDFFFQQKCLDYIKRLLANGTTLLFVSHDMGTV 209 GM R+ A ++ +P ++++DE D +Q +I RL G T++ +H + Sbjct: 136 GMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWKFISRLNREGHTVVLTTHYLEEA 195 Query: 210 RDICQRVIYLKKGELIFDGATN 231 + +C RV LK G+++ AT+ Sbjct: 196 QALCNRVAMLKAGQVVALDATS 217 >gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 336 Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/281 (25%), Positives = 129/281 (45%), Gaps = 28/281 (9%) Query: 6 ISVQGISKRYRVRQSGASSLFKRFRGKSAPDEGAWALQDISFNVGRGEAVAIIGRNGGGK 65 +++Q +SKR+ A+ + F K + E A+ ++ + GE V ++G +G GK Sbjct: 9 LALQDVSKRFAQPLDTAARIANLFGAKKS-AEVVHAVDQVTLTIHAGEVVGLVGESGCGK 67 Query: 66 STLLEILTGTLSPSSGS---VKVNGRVAALLE-----LG---------SGFNPEYSGRDN 108 STL + G + SSGS VN V++ E LG + NP +D Sbjct: 68 STLGRMAVGLHTLSSGSRLWKGVNLEVSSAAERRQQQLGMQMIFQDPYASLNPRMRIQDV 127 Query: 109 V----MLNGLLLGLTREEILGRFSEIEAFAEIGAAIDRPVKTYSSGMLMRLAFAVQVLAR 164 + + +G++ + E + R ++ A R +S G R+ A + + Sbjct: 128 IGEAPVAHGMVPASEQTEYVARL--LQTVGLDPALARRFPHQFSGGQRARIGIARALAVK 185 Query: 165 PDILIVDEALGVGDFFFQQKCLD-YIKRLLANGTTLLFVSHDMGTVRDICQRVIYLKKGE 223 P++L+ DEA+ D Q + L+ +IK T LF+SHD+G VR + RV+ + G Sbjct: 186 PELLVCDEAVAALDVSIQAQVLNLFIKLRDELNLTYLFISHDLGVVRHVSDRVLIMYLGR 245 Query: 224 LIFDGATNDGVALYFREASAPAVETESASPRAEMMETEVHA 264 ++ T + L+ R V +++PR E+ + + +A Sbjct: 246 IVESSPTAE---LFARPNHPYTVALLASAPRLEVKKIDFYA 283 >gi|134096065|ref|YP_001101140.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 227 Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 20/216 (9%) Query: 26 FKRFRGKSAPDEGAWALQDISFNVGRGEAVAIIGRNGGGKSTLLEILTGTLSPSSGSVKV 85 F++ K A + AL DI+ +V +GE V + G +G GKSTLL+++ PS+G+V V Sbjct: 4 FRQVSKKYA--QNVTALSDITLSVDKGELVFLAGPSGAGKSTLLKMIAAIERPSAGTVIV 61 Query: 86 N----GRVAA------LLELGSGFNPEYSGRD-----NVMLNGLLLG-LTREEILGRFSE 129 + GR+ LG F + D NVML ++ G + + Sbjct: 62 SDHDIGRIKNSGLPYLRRNLGLIFQQQRLLSDRSVLANVMLPLIVCGAARADAERRARAA 121 Query: 130 IEAFAEIGAAIDRPVKTYSSGMLMRLAFAVQVLARPDILIVDEALGVGDFFFQQKCLDYI 189 ++ + A P +T S G R++ A ++ RP I++ DE D K LD + Sbjct: 122 LDKVGLLDKAASAP-QTLSGGEQQRVSIARAIVNRPQIILADEPTANLDRESANKVLDAL 180 Query: 190 KRLLANGTTLLFVSHDMGTVRDICQRVIYLKKGELI 225 K A G T L +HD + D RVIYL G++I Sbjct: 181 KAFHAVGVTCLISTHDEQFL-DTATRVIYLDHGKII 215 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 17/207 (8%) Query: 42 LQDISFNVGRGEAVAIIGRNGGGKSTLLEILTGTLSPSSGSVKVNG-------------- 87 L D + +V +G+ V + G +G GKSTL++ + G GS+ V+G Sbjct: 17 LNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITVDGISVGDPKTNLPALR 76 Query: 88 -RVAALLELGSGFNPEYSGRDNVMLNGL-LLGLTREEILGRFSEIEAFAEIGAAIDRPVK 145 R+ + + F P S R+N+ L + +LG + EE R + + A D+ Sbjct: 77 SRIGMVFQNFELF-PHLSIRENLTLGQIRVLGRSEEEAAERGLKYLDRVGLIAQKDKFPG 135 Query: 146 TYSSGMLMRLAFAVQVLARPDILIVDEALGVGDFFFQQKCLDYIKRLLANGTTLLFVSHD 205 S G R+A A + P ++ DE D + LD + L +G T++ V+H+ Sbjct: 136 QLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQDGMTMMVVTHE 195 Query: 206 MGTVRDICQRVIYLKKGELIFDGATND 232 MG R + RVI++ +G ++ D ++ Sbjct: 196 MGFARKVANRVIFMDQGTIVEDCTKDE 222 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 814,652 Number of extensions: 34829 Number of successful extensions: 218 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 204 Number of HSP's successfully gapped: 31 Length of query: 429 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 345 Effective length of database: 723,567 Effective search space: 249630615 Effective search space used: 249630615 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)