BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0453.p
         (278 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095898|ref|YP_001100973.1| diadenosine tetraphosphatase [H...   359   e-101

>gi|134095898|ref|YP_001100973.1| diadenosine tetraphosphatase
           [Herminiimonas arsenicoxydans]
          Length = 275

 Score =  359 bits (922), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 171/270 (63%), Positives = 208/270 (77%), Gaps = 1/270 (0%)

Query: 9   YVLGDVQGCDGSLQALLAQLFNEPKNISHLIFAGDLINRGPQSLQTLRTVMQMGEQAQAV 68
           Y +GD+QGC   L ALL ++ +     + L+F GD++NRGP+SL TLR +  + ++A+ V
Sbjct: 4   YAIGDLQGCHTQLLALLDKI-DAITPQAQLVFVGDIVNRGPKSLATLRHLYGLRQRARIV 62

Query: 69  LGNHDLHLLAVACGIRPAHRDDTLDDILNAPDREELIHWLRHRPLAIHEQGHLIVHAGVL 128
           LGNHDL+LLAVACG+R  H  DTLDDIL A DREEL+ WLRH+PLA+ + GHL VHAGVL
Sbjct: 63  LGNHDLNLLAVACGLRKPHHADTLDDILAAHDREELLTWLRHQPLALEQDGHLCVHAGVL 122

Query: 129 PQWDLHQALALAAEVETMLQSEQWVDFLRHMYGNQPARWSDDLSGYERLRCIINAFTRLR 188
           PQW + QALAL+ EVE +LQSE WV FL  MYGN+PARW DDL G +RLRCI+NA TRLR
Sbjct: 123 PQWSMQQALALSGEVEAVLQSENWVAFLHGMYGNEPARWDDDLQGADRLRCIVNALTRLR 182

Query: 189 FCQADGTMDFAVKEGAAAAPEGLLPWFEVPGRRTAEVTVVFGHWSTLGLVMRPNLIALDT 248
           FC  DG MDF   E A   P GLLPWF++P R+TA+ TVVFGHWSTLGL+MRPNL+ LDT
Sbjct: 183 FCSPDGRMDFKTTEAAENPPAGLLPWFDLPDRKTADSTVVFGHWSTLGLLMRPNLLGLDT 242

Query: 249 GCVWGGKLSAVRLEDRALFQVQCPQARQPS 278
           GCVWGGKL+AV L+DR   QV CPQ ++PS
Sbjct: 243 GCVWGGKLTAVNLQDRTTIQVACPQHQRPS 272


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 564,557
Number of extensions: 23502
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 198
Effective length of database: 736,747
Effective search space: 145875906
Effective search space used: 145875906
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)