BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0451.p
         (428 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095900|ref|YP_001100975.1| aspartate carbamoyltransferase,...   561   e-161

>gi|134095900|ref|YP_001100975.1| aspartate carbamoyltransferase,
           non-catalytic subunit [Herminiimonas arsenicoxydans]
          Length = 354

 Score =  561 bits (1446), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 277/354 (78%), Positives = 311/354 (87%), Gaps = 4/354 (1%)

Query: 79  MQAAIQGGVTSLVCPPDTDPVLDEPGLVEMLKHRARSLNQAHVYPLGALTAGLKGKALTE 138
           MQAAIQGGVTSL+CPPDTDPVLDEPGLVEMLKHRA+SLNQAHVYPLGALT GLKG ALTE
Sbjct: 1   MQAAIQGGVTSLICPPDTDPVLDEPGLVEMLKHRAKSLNQAHVYPLGALTMGLKGAALTE 60

Query: 139 MAELTEAGCIGFSQAEEPITDTTVLLSALQYAKTFNYTVWLRPQDPHLGRSGIAHSGPAA 198
           MAELT+AGCIGF+QA++PI DTTVLL A+QYAKTF+YTVWLRPQDPHLGR G+AHSGP A
Sbjct: 61  MAELTDAGCIGFAQADQPILDTTVLLRAMQYAKTFDYTVWLRPQDPHLGRKGVAHSGPVA 120

Query: 199 SRLGLSGVPVMSETIALYTLFELMRATGARVHLCRMSSAAGLELVRQAKSEGLPVTCDVG 258
           SRLGLSGVPVM+ETIAL+T+ EL+R TG RVHLCRMSSAAGLELVR AK EGLP++CDVG
Sbjct: 121 SRLGLSGVPVMAETIALHTILELVRVTGTRVHLCRMSSAAGLELVRAAKQEGLPISCDVG 180

Query: 259 VHHIHLCDLDIGFFDSNARMTPPLRSQRDREAIRTALLDGTIDAVCSDHTPVDDDEKLLP 318
            HHIHL + DIGFFDSNAR+TPPLRSQRDR+AI  ALLDGTIDA+CSDHTPVDDDEKLLP
Sbjct: 181 AHHIHLTENDIGFFDSNARLTPPLRSQRDRDAIHRALLDGTIDAICSDHTPVDDDEKLLP 240

Query: 319 FGEASPGATGLELLLSLSLKWALET----EGQGKEVLSKAISKVTHRAAKVAGLKAGNLA 374
           FGEASPGATGLELLLSL+LKWA       +   ++ L +AI+K++  AA+V GL +G LA
Sbjct: 241 FGEASPGATGLELLLSLALKWAENCADLDKQSSQQSLVQAIAKISADAARVVGLPSGQLA 300

Query: 375 VGSAADLCLFDPNALWKVQGAALASQGKHTPFLGYELPGVVKATIVSGHIAFER 428
           +GS AD+CLFDP A W V   ALASQGKHTPFLGYEL G VK TIV+GHIA++R
Sbjct: 301 LGSVADICLFDPAARWTVAAKALASQGKHTPFLGYELSGQVKTTIVAGHIAYQR 354


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 794,553
Number of extensions: 31394
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 344
Effective length of database: 723,567
Effective search space: 248907048
Effective search space used: 248907048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)