BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0449.p
         (170 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095902|ref|YP_001100977.1| bifunctional pyrimidine regulat...   268   8e-74

>gi|134095902|ref|YP_001100977.1| bifunctional pyrimidine regulatory
           protein PyrR uracil phosphoribosyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 172

 Score =  268 bits (686), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 130/164 (79%), Positives = 147/164 (89%)

Query: 7   QLDAEALYQTLVQQIQAGLQGATEVALVGIHSGGAWLAERLASELGLAERLGFVDVSFYR 66
           +LDAEALYQ L QQ++ GL  A  VA+VGI+SGGAWLAERLA+EL L ERLGF+DVSFYR
Sbjct: 9   ELDAEALYQQLAQQVKTGLAKAENVAIVGIYSGGAWLAERLAAELQLTERLGFIDVSFYR 68

Query: 67  DDFSEKGLRADVKPSQIPFDVEGATILLVDDVLYTGRTTRAAINELFDYGRPARVLLAAL 126
           DDF+EKGLR DVKP+QIPFDV+GATILLVDDVLYTGRTTRAAINELFDYGRPAR++LAAL
Sbjct: 69  DDFAEKGLRPDVKPTQIPFDVDGATILLVDDVLYTGRTTRAAINELFDYGRPARIMLAAL 128

Query: 127 VDRGGRELPIAADFVAASVELSKQENLQLQRADDGRFSLTVVHA 170
            DRGGRELPIAADFVA ++ +  Q++L LQRADDGRFSLTV HA
Sbjct: 129 ADRGGRELPIAADFVAQTISIPDQQSLVLQRADDGRFSLTVDHA 172


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 318,010
Number of extensions: 12670
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 95
Effective length of database: 753,222
Effective search space: 71556090
Effective search space used: 71556090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)