BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0447.p
         (193 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095904|ref|YP_001100979.1| hypothetical protein HEAR2740 [...   273   5e-75

>gi|134095904|ref|YP_001100979.1| hypothetical protein HEAR2740
           [Herminiimonas arsenicoxydans]
          Length = 225

 Score =  273 bits (698), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 134/192 (69%), Positives = 158/192 (82%), Gaps = 4/192 (2%)

Query: 2   ELDLTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRINLKLE 61
           EL+L +HFLIAMPSMLDP+FGG VVYLCEHN NGALGV+INKPTDMT+ VL  RI+LKLE
Sbjct: 38  ELNLADHFLIAMPSMLDPVFGGAVVYLCEHNANGALGVIINKPTDMTVSVLLSRIDLKLE 97

Query: 62  IRPDTPDAMPELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVLEAV 121
           I    PD +P L +  VM+GGPVQ +RGFVLH+    +SSTL V  ++ALTTSKD+LEAV
Sbjct: 98  I---APDKLP-LEKTLVMYGGPVQADRGFVLHAPRGNFSSTLPVAGDIALTTSKDILEAV 153

Query: 122 AHGDGPERVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPAIIFELPVEQRFTAALALLGI 181
           A G GP+R+LV+LGCSGW  GQLE EI RNGWLTV+ADP I+F+LP+EQRF AAL LLGI
Sbjct: 154 AMGAGPQRMLVSLGCSGWGAGQLEDEIVRNGWLTVRADPDIMFDLPLEQRFVAALKLLGI 213

Query: 182 DPVMLSGDAGRA 193
           DP+MLS +AG A
Sbjct: 214 DPMMLSSEAGHA 225


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 399,462
Number of extensions: 15872
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 116
Effective length of database: 746,632
Effective search space: 86609312
Effective search space used: 86609312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)