BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0445.p
         (267 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permeas...    67   1e-12

>gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permease
           [Herminiimonas arsenicoxydans]
          Length = 304

 Score = 66.6 bits (161), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 108/218 (49%), Gaps = 19/218 (8%)

Query: 11  RPGFWRVVAPLSIGIALLLMWQIVCTLLEVPPYLVPTPALIAKTLVA------------D 58
           RP F  VV P+   + L+L+W+I+          +P+PA+  K+ +             D
Sbjct: 48  RPFFMSVVPPIFGVLFLVLVWEIISAKNSG----IPSPAVTLKSAIDLFADPFYSNGPND 103

Query: 59  WGMLMESLLVTLKITFLAFVLAVILGVSIAFVFVQSRFIEVSLFPYAIILQVTPIVAIAP 118
            G +  ++L +LK   + F LA ++G+ + F+  + +F+     P   +L+    +A  P
Sbjct: 104 QG-IGWNILASLKRVAVGFGLAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLP 162

Query: 119 LIIIWVKDTTAALTVCATIMALFPIISNTTLGLRSVNPGLLNLFRLNKATRWQTLRRLRI 178
           + ++  K    A      I +++P+I NT +G++ V    +N+ R+   + W+ + ++  
Sbjct: 163 IGLLVFKAADPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKIVTKILF 222

Query: 179 PSALPYFFGGLRISSGLALIGAVVAEFVAGTGGTGSGL 216
           PS LPY   G+R++ G A +  V AE +  TGG G G 
Sbjct: 223 PSVLPYMLTGVRLAIGTAWLVIVAAEML--TGGVGIGF 258


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.330    0.142    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 475,909
Number of extensions: 18357
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 2
Length of query: 267
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 187
Effective length of database: 736,747
Effective search space: 137771689
Effective search space used: 137771689
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)