BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0444.p (260 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 162 1e-41 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 161 3e-41 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 161 4e-41 gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting A... 149 2e-37 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 136 1e-33 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 162 bits (411), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 136/227 (59%), Gaps = 10/227 (4%) Query: 7 VEKTYR--NGT--RALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWW 62 V K+++ +GT L+ V + GE V+LLG SG GKSTLL++ AGL G ++ Sbjct: 12 VAKSFKTADGTPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAADQGTAKYR 71 Query: 63 GGNLATVGTPERTLAMVFQEATLMPWATVEQNARLPLELRHVPRAQADARVAEALKLVGL 122 G + +P +AMVFQ L PW TV+QN L LE + + + + R L L+GL Sbjct: 72 G---QEIYSPVSGIAMVFQSFALFPWLTVQQNVELGLEAQGMAPDEREKRADAMLDLIGL 128 Query: 123 EKFHKVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSKQ 182 F LPRELSGGM+ R IAR L T P++LLMDE F ALD T L D+ ++W ++ Sbjct: 129 AGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEMWEEK 188 Query: 183 DLT---VVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAIEVDGPRD 226 + ++ V+H+I EAV ++ R++V+++ PGR+ +++ I + PR+ Sbjct: 189 RIPTKGILIVSHNIEEAVMMADRILVLSSSPGRIRSEIRINLPRPRN 235 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 161 bits (407), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 95/236 (40%), Positives = 139/236 (58%), Gaps = 10/236 (4%) Query: 17 ALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGGNLATVG-TPERT 75 AL ++ L + +GEF++L+G SGCGKSTLL + AGL + + G + GN G +PER Sbjct: 27 ALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGGML--LCGNREIAGPSPER- 83 Query: 76 LAMVFQEATLMPWATVEQNARLPLEL---RHVPRAQADARVAEALKLVGLEKFHKVLPRE 132 A+VFQ +L+PW T +N L +E + +A+ AR AL LVGL + P E Sbjct: 84 -AVVFQNHSLLPWLTCYENVYLAVERVFGKVEGKAKLRARTRAALSLVGLTHAEQKRPNE 142 Query: 133 LSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSKQDLTVVFVTHS 192 +SGGM+ R IARAL+ P +LLMDEPFGALD TR L +L I + TVV VTH Sbjct: 143 ISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGSTVVMVTHD 202 Query: 193 IYEAVFLSSRVIVMAARPGRVIADV-AIEVDGPRDE-AFRISAPFMQYCKTLSDYL 246 + EAV LS +++++ P I ++ +++ PR+ A A + +Y + ++L Sbjct: 203 VDEAVLLSDKIVMLTNGPSATIGEILEVKLAHPRERVALAKDAQYSEYRTAVLEFL 258 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 161 bits (407), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 118/201 (58%), Gaps = 6/201 (2%) Query: 12 RNGTR------ALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGGN 65 RN TR +D + L I GEF +LLGPSGCGK+TLL+M AG +EP G I G + Sbjct: 7 RNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLDGVD 66 Query: 66 LATVGTPERTLAMVFQEATLMPWATVEQNARLPLELRHVPRAQADARVAEALKLVGLEKF 125 L V +R + VFQ L P TV N PLE+ + P+++ +V EAL+ V L F Sbjct: 67 LTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALEDVRLTGF 126 Query: 126 HKVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSKQDLT 185 P ELSGG + R SIARAL T P LLL+DEP ALD R ++ +L ++ + +T Sbjct: 127 AARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEVGIT 186 Query: 186 VVFVTHSIYEAVFLSSRVIVM 206 V+VTH EA+ LS R+ VM Sbjct: 187 FVYVTHDQAEALALSHRIAVM 207 >gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting ATPase [Herminiimonas arsenicoxydans] Length = 262 Score = 149 bits (375), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 123/223 (55%), Gaps = 11/223 (4%) Query: 9 KTYRNGTRALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGGNLAT 68 KT + A V + + + LLGPSGCGKSTLLK G P+ G +R + Sbjct: 19 KTKEHLVTATYRVDFKVYKSDRFVLLGPSGCGKSTLLKAVGGYMMPTEGEMRL---HDKV 75 Query: 69 VGTPERTLAMVFQE-ATLMPWATVEQNARLPLELR-HVPRAQADARVAEALKLVGLEKFH 126 + P MVFQE L PW TV+QN PL + +A+ + ++ V L KF Sbjct: 76 ITKPWYDRMMVFQEFDQLPPWKTVKQNVMFPLLASGKLKGKEAEDKAMYYIEKVNLSKFA 135 Query: 127 KVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSKQDLTV 186 P LSGGM+ R +IAR +A P++LLMDEP+ ALD TR K+ +L +W TV Sbjct: 136 DHYPHMLSGGMKQRVAIARGMAMEPDILLMDEPYAALDALTRKKMQDELLQLWDDTHFTV 195 Query: 187 VFVTHSIYEAVFLSSRVIVMAARPGRVIADV------AIEVDG 223 +FVTHSI EAV + +R+++++ PG+V A++ I+ DG Sbjct: 196 LFVTHSIAEAVKIGNRILLLSPHPGQVTAELNSTGEDTIDADG 238 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 136 bits (343), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 133/239 (55%), Gaps = 12/239 (5%) Query: 2 LSAQRVEKTYRNGTRALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRW 61 + + + K + N AL++V L+ GE +LLGPSGCGK+TLL++ AGLE+P HG + Sbjct: 3 IEVKNINKKFGNFV-ALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLL 61 Query: 62 WGGNLATVGTPERTLAMVFQEATLMPWATVEQNARLPLELRHVPRAQADA----RVAEAL 117 G + + ER + VFQ L TV +N L +R +++ +V + L Sbjct: 62 DGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLL 121 Query: 118 KLVGLEKFHKVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRD 177 +LV L+ P +LSGG + R ++ARALA P +LL+DEPFGALD R +L LR Sbjct: 122 ELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRR 181 Query: 178 IWSKQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAIEVDGPRDEAFRISAPFM 236 + + +T +FVTH EA+ ++ ++++M G V ++ P+D ++PF+ Sbjct: 182 LHDELHVTSIFVTHDQEEALEVADQIVLM--NKGHV-----EQIGAPKDVYNNPASPFV 233 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 480,646 Number of extensions: 19104 Number of successful extensions: 203 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 47 Length of query: 260 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 180 Effective length of database: 736,747 Effective search space: 132614460 Effective search space used: 132614460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)