BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0438.p (565 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 417 e-118 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 387 e-109 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 383 e-107 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 364 e-102 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 359 e-100 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 417 bits (1071), Expect = e-118, Method: Compositional matrix adjust. Identities = 268/538 (49%), Positives = 354/538 (65%), Gaps = 30/538 (5%) Query: 1 MKSAMKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFKHVVEVKNPESALVKDM--- 57 M M VGT+L F + + +V G GI+NM ++ + + + + +KD Sbjct: 1 MFKNMTVGTKLISSFLTLSVAGAIVAGIGIYNMGKINDKAGDIYNQELMGLSYIKDANID 60 Query: 58 LETVGERSISLRNLMLPAAPEDVDIEAQYIEAQTLKYRMSAQ----KLQQLFSESADTSE 113 L +G + N++L E+ + + I+ KY SA+ K Q LF S+ Sbjct: 61 LLFIGR---ARGNVLLSTTEEERTLNKENIK----KYLASAKENLAKAQPLF-----VSD 108 Query: 114 EEKAALPKIQARAATAEKLISEAVEFGKR----REAYELAQFLKEQYLPVQKAWQVELKA 169 KA K + EK + A+ + + + EL + + L V Sbjct: 109 SAKALFAKYATVSQDYEKEMWRALALADKEPLQQRSAELTTSMAQTRLHANTLDNV---- 164 Query: 170 LAALEDKLNLEAAESSAAA---YGRARLLMLLISAIGVVTAVLAAILITRQILRKLGGEP 226 L L + + AA++ Y +R M+L+ + + +L +LITR + +LGGEP Sbjct: 165 LTELSKQKEVRAAQAHVETEQLYDSSRAFMVLLVILSAFSGILLGVLITRNLKGQLGGEP 224 Query: 227 DYAVQIAGQIAEGDLAVVIDTRAGDNDSLMAAMRVMRDKLAAIVSEVRRGSDTITTASSE 286 +YA +A +IA GDL V ID R+ D S++ AMR MRD LA+IVS+VR G+DTITTAS + Sbjct: 225 NYAAGVAARIAAGDLTVAIDLRSKDQTSMLFAMREMRDSLASIVSQVRSGTDTITTASGQ 284 Query: 287 IARGNLDLSARTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSI 346 IA GNLDLS+RTE+QA ALEETASSME++ STVKQNAEN+ QA+ LA+ AS A++GG++ Sbjct: 285 IAAGNLDLSSRTEEQASALEETASSMEEITSTVKQNAENSQQASTLAVHASSTAIRGGAV 344 Query: 347 VSQVVATMESINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 406 VSQVV TM SI SS+K+ DI+ VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV Sbjct: 345 VSQVVDTMGSITESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 404 Query: 407 RSLAQRSASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMTEIVTSIRRVTDVMTEITHAN 466 RSLAQRSASAAKEIK LIGDSV KV+ GSKLVEQAG+TM EIV I+RV D+M++IT A Sbjct: 405 RSLAQRSASAAKEIKQLIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDITAAG 464 Query: 467 REQSSGIEQVNEAIIQIDDMTQQNAALVEQAAAAARQLQEQAAGLQQLVSVFRIDAAQ 524 REQS+GIEQVN+AI Q+D++TQQNAALVE+AAAA++ LQ+QA L ++VSVF++D Q Sbjct: 465 REQSAGIEQVNQAIAQMDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSVFKLDNTQ 522 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 387 bits (994), Expect = e-109, Method: Compositional matrix adjust. Identities = 231/394 (58%), Positives = 293/394 (74%), Gaps = 4/394 (1%) Query: 136 AVEFGKRREAYELAQFLKEQYLPVQKAWQVELKALAALEDKLNLEAAESSAAAYGRARLL 195 A++ G+ EA +L Q ++ +P + L+ L E L EAA+ Y R + Sbjct: 133 ALQKGQVVEAMQLQQQF-QKLVPAVRNSIDALRKLQVDEAGLAYEAAQQR---YLTIRNV 188 Query: 196 MLLISAIGVVTAVLAAILITRQILRKLGGEPDYAVQIAGQIAEGDLAVVIDTRAGDNDSL 255 + + G V A L L+ R + +LGGEP YA QI +IA GDL+ I TR GD +SL Sbjct: 189 IATVLGAGAVAATLLGFLLVRSVYAQLGGEPQYAAQIVRRIAGGDLSATIITRKGDRNSL 248 Query: 256 MAAMRVMRDKLAAIVSEVRRGSDTITTASSEIARGNLDLSARTEQQAGALEETASSMEQL 315 +AAM+ M+ LA V ++RR SDTI TAS +IA GN+DLSARTEQQA +LEETASSME+L Sbjct: 249 LAAMQDMQQNLAKTVGDIRRASDTIATASGQIAAGNIDLSARTEQQASSLEETASSMEEL 308 Query: 316 NSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVATMESINASSQKVADIVSVIDGIA 375 +TVKQNA +A QAN LA++ASD+AVQG ++V+QVV TM+SI+AS+ ++ DI+ VI+GIA Sbjct: 309 TATVKQNAGHAQQANQLAVSASDIAVQGNTVVAQVVTTMDSISASAGRIGDIIGVINGIA 368 Query: 376 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGS 435 FQTNILALNAAVEAAR GEQGRGFAVVA+EVRSLAQRSA AAKEIK LI DS+ KV G+ Sbjct: 369 FQTNILALNAAVEAARVGEQGRGFAVVATEVRSLAQRSAEAAKEIKSLIDDSLEKVGAGA 428 Query: 436 KLVEQAGSTMTEIVTSIRRVTDVMTEITHANREQSSGIEQVNEAIIQIDDMTQQNAALVE 495 LV+QAGSTM EIV SI +VTD+M EIT A+REQ++GIEQVN+AI Q+D +TQQNAALVE Sbjct: 429 TLVDQAGSTMNEIVASIGQVTDIMGEITTASREQTAGIEQVNQAIGQMDRVTQQNAALVE 488 Query: 496 QAAAAARQLQEQAAGLQQLVSVFRIDAAQARVTS 529 +AAAAA LQEQA L Q+VSVF+++ AQ+ T+ Sbjct: 489 EAAAAAGSLQEQACSLVQVVSVFKLEQAQSHRTA 522 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust. Identities = 247/520 (47%), Positives = 339/520 (65%), Gaps = 16/520 (3%) Query: 5 MKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFKHVVEVKNPESALVKDMLETVGER 64 +K+G RLG+ F +++L+ +T G+ + V K V + E A +K+ L + Sbjct: 6 LKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVA---KATVLM---EEATIKERLAQQWIK 59 Query: 65 SISLRNLMLPAAPEDVDIEAQYIEAQTLKYRMSAQKLQQLFSESADTSEEEKAALPKIQA 124 I + A D E I Q + +A QQ E+ S E K L + Sbjct: 60 GIETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATVAE 119 Query: 125 RAATAEKLISEAVEFGKRREAYELAQFLKEQYLPVQKAWQVELKALAALEDKLNLEAAES 184 + AT + + + + R A EL + + P A+ ++A+ + N E A+ Sbjct: 120 KRATYTAIRDDVMNLREARGA-ELQNAIANKMKPAADAYIQSVEAVVNAQIN-NFEDAKG 177 Query: 185 SA-AAYGRARLLMLLISAIGVVTAVLAAILITRQILRKLGGEPDYAVQIAGQIAEGDLA- 242 Y AR+L++++ + + ++ A ++TR I + L DYAV +A +A GDL Sbjct: 178 RVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPL----DYAVSVARLVASGDLTG 233 Query: 243 -VVIDTRAGDNDSLMAAMRVMRDKLAAIVSEVRRGSDTITTASSEIARGNLDLSARTEQQ 301 + +D++ + L+ A++ M D L A +++VR G DTI TAS++IA GNLDLS+RTE+Q Sbjct: 234 RITVDSK-DETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQ 292 Query: 302 AGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVATMESINASS 361 A +LEETASSME+L STVKQNA+NA QAN LA+ AS VA +GG++VS+VV TM+ IN S+ Sbjct: 293 ASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSA 352 Query: 362 QKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK 421 +K+ DI+ VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK Sbjct: 353 RKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 412 Query: 422 VLIGDSVGKVENGSKLVEQAGSTMTEIVTSIRRVTDVMTEITHANREQSSGIEQVNEAII 481 LI DSV KV+ GSKLV +AG+TM E+V S++RVTD+M EI A++EQS+GIEQVN+AI Sbjct: 413 TLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIG 472 Query: 482 QIDDMTQQNAALVEQAAAAARQLQEQAAGLQQLVSVFRID 521 Q+D +TQQNAALVE+AAAAA L EQAA L Q VS+F++D Sbjct: 473 QMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLD 512 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 364 bits (934), Expect = e-102, Method: Compositional matrix adjust. Identities = 256/540 (47%), Positives = 339/540 (62%), Gaps = 30/540 (5%) Query: 5 MKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQV-QGRFKHVVEVKNPESALVKDMLETVGE 63 +K+G RLGL FA V+LL+ + G++ + +V Q + E A ++ L Sbjct: 6 LKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRM-------EEAAEQERLSIQWH 58 Query: 64 RSISLRNLMLPAAPEDVDIEAQYIEAQTLKYRMSAQ-----KLQQLFSESADTSEEEKAA 118 S + A + E Q Q + M+AQ KLQ ES SEE K Sbjct: 59 AGNSANAIRTTARIRSTNQEVQ----QQFQNEMTAQSVEITKLQNKL-ESLIHSEEGKKL 113 Query: 119 LPKIQARAATAEKLISEAVEF---GKRREAYELAQFLKEQYLPVQKAWQVELKALAALED 175 + + + + E + G E + + + P + + ++ + + Sbjct: 114 MSAVGDKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQ 173 Query: 176 KLNLEAAESSAAAYGRARLLMLLISAIGVVTAVLAAILITRQILRKLGGEPDYAVQIAGQ 235 LEA Y R+ +L + AI + + L A L++R I R L +YAV++A Sbjct: 174 VTFLEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPL----EYAVEVART 229 Query: 236 IAEGDLAVVIDTRAGDNDS-LMAAMRVMRDKLAAIVSEVRRGSDTITTASSEIARGNLDL 294 +A GDL I+ + D L+ A+R M D L VSEVR G +TI TAS++IA GNLDL Sbjct: 230 VAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDL 289 Query: 295 SARTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVATM 354 S+RTE+QA +LEETASSME+L STVKQNA+NA QAN LA++AS VA +GG +VSQVV TM Sbjct: 290 SSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTM 349 Query: 355 ESINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 414 E IN+S++K+ DI+ VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA Sbjct: 350 EDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSA 409 Query: 415 SAAKEIKVLIGDSVGKVENGSKLVEQAGSTMTEIVTSIRRVTDVMTEITHANREQSSGIE 474 +AAKEIK LIGDSV KV+ GSKLV +AG TM E+V S++RVTD+M+EI A++EQS+GIE Sbjct: 410 AAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIE 469 Query: 475 QVNEAIIQIDDMTQQNAALVEQAAAAARQLQEQAAGLQQLVSVFRIDAAQARVTSSTSAS 534 QVN+AI Q+D +TQQNAALVE+AAAAA L EQA L + VSVF++D V +ST A+ Sbjct: 470 QVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDG----VAASTPAT 525 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 359 bits (921), Expect = e-100, Method: Compositional matrix adjust. Identities = 256/540 (47%), Positives = 351/540 (65%), Gaps = 35/540 (6%) Query: 5 MKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFKHVVEVKNPESALVKDMLETVGER 64 MK+GTRLGLGF ++LL+ + GI + + G +H+V+ ++ L +G Sbjct: 6 MKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWL--LGTS 63 Query: 65 SISLRNLMLPAA--PEDVDIEAQYIEAQT---------LKYRMSAQKLQQLFSESADTSE 113 + R L L A PE + + I AQ+ ++ R+++ K ++LF+E A Sbjct: 64 VNASRTLALVKASDPESQEFFQKAITAQSKQITEIQKSIEDRINSDKEKELFAEVA---- 119 Query: 114 EEKAALPKIQARAATAEKLISEAVEFGKRREAYELAQFLKEQYLPVQKAWQVELK-ALAA 172 ++++A I+ K I G EA Q + + +P A+ +K L Sbjct: 120 KKRSAYIDIR-------KSILGVKAGGNIAEAN---QMIDTKMVPALDAYVDSVKNVLGH 169 Query: 173 LEDKLNLEAAESSAAAYGRARLLMLLISAIGVVTAVLAAILITRQILRKLGGEPDYAVQI 232 E+++ L A ES Y R+ +++ + I ++ L A +T I R L A+++ Sbjct: 170 YENEVKL-ADESITDDYLSGRMALIIGAVIAILLGTLIAWRLTVGITRPL----HEALKV 224 Query: 233 AGQIAEGDLAVVIDTRAGDNDS--LMAAMRVMRDKLAAIVSEVRRGSDTITTASSEIARG 290 A +AEGDL D ++ L++A+ M+ L V+++R G+DTI TASSEIA G Sbjct: 225 AESVAEGDLTARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASG 284 Query: 291 NLDLSARTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQV 350 NLDLS+RTEQQA +LEETASSME+L STVKQNA+N+ QAN LA+AAS VAV+GG++VSQV Sbjct: 285 NLDLSSRTEQQASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQV 344 Query: 351 VATMESINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 410 V TM +IN S++K+ DI+ VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LA Sbjct: 345 VDTMGAINNSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLA 404 Query: 411 QRSASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMTEIVTSIRRVTDVMTEITHANREQS 470 QRSA+AAKEIK LIGDSV KV+ GSKLV +AG+TM EIV ++RV D+M EIT A++EQS Sbjct: 405 QRSAAAAKEIKTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQS 464 Query: 471 SGIEQVNEAIIQIDDMTQQNAALVEQAAAAARQLQEQAAGLQQLVSVFRIDAAQARVTSS 530 GIEQVN+A+ Q+D +TQQNAALVE+AAAAA LQ+QA L + VSVFR+ + A S+ Sbjct: 465 DGIEQVNQAVSQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRVGSGYATAQSA 524 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.125 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 746,177 Number of extensions: 23999 Number of successful extensions: 200 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 15 Length of query: 565 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 478 Effective length of database: 713,682 Effective search space: 341139996 Effective search space used: 341139996 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)