BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0437.p (921 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Hermi... 1480 0.0 gi|134093425|ref|YP_001098500.1| putative 5'-3' exonuclease [Her... 140 2e-34 >gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 911 Score = 1480 bits (3832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 715/925 (77%), Positives = 800/925 (86%), Gaps = 18/925 (1%) Query: 1 MQKTLLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYP-ASYVACVFD 59 M KTLLLVDGSSYLYRAFHA+PD+R EGAPTGA+YG+INMLRRLR DYP A Y+ACVFD Sbjct: 1 MNKTLLLVDGSSYLYRAFHAMPDLRGPEGAPTGAIYGMINMLRRLRKDYPDAEYMACVFD 60 Query: 60 AKGKTFRDDLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSV 119 AKGKTFRDDLY +YKA R SMP+DL QIEPIH AVRA+GWPILMV+GIEADDVI TL+V Sbjct: 61 AKGKTFRDDLYAEYKAQRASMPDDLVRQIEPIHEAVRAMGWPILMVDGIEADDVIATLAV 120 Query: 120 QATSAGLDTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIVDYLSLI 179 A G++T++STGDKD+AQLVNEHVTLVNTMS E+LD GV AKFGVPPERIVDYL+L+ Sbjct: 121 AAVGHGINTVISTGDKDLAQLVNEHVTLVNTMSGEILDRDGVLAKFGVPPERIVDYLTLV 180 Query: 180 GDTVDNVPGVEKCGPKTAVKWLTAYGSLDGVMANADKITGVVGENLRRALDWLPQGRVLV 239 GDTVDNVPGVEK GPKTAVKWLT YG+LDG++A+A +I GVVGENLRRALDWLPQ +VL+ Sbjct: 181 GDTVDNVPGVEKVGPKTAVKWLTQYGTLDGIVAHAAEIKGVVGENLRRALDWLPQAKVLI 240 Query: 240 TVKTDCDLSEHMKSILESLTMQPQDKEVLKELFTRYNFRTWLRELSEGADAAAGAKAPMV 299 TVKTDCDLS HM I ESLT + +D E + F R F++WLREL+E + A A AP Sbjct: 241 TVKTDCDLSAHMTEIPESLTQKTEDIEAMVAFFKRNGFKSWLRELTEKTEMPASATAP-- 298 Query: 300 GAAAAAALETPAQGGLFAA-APKVE--YETVLTDAQLDQWIAAINAAELTAVDTETTSLE 356 QG LF P+VE YETV T+A LD+W+ INAAELTA+DTETTSLE Sbjct: 299 ------------QGALFGEDTPEVEKHYETVWTEANLDRWLQKINAAELTAIDTETTSLE 346 Query: 357 AMQAELVGISLCCEPGRAAYIPVAHNYQDAPAQLSREHVLDKLKPWLEDASKPKLGQHLK 416 MQA+LVGISLCCEPG AAYIPVAH YQD P QLSR VL+KL+ WLED SKPK+GQ+LK Sbjct: 347 PMQAQLVGISLCCEPGVAAYIPVAHRYQDVPLQLSRASVLEKLRSWLEDDSKPKVGQNLK 406 Query: 417 YDSHIFANYGVRLAGVKHDTLLESYVFESHRPHDMDSLAARHLERKTITYAEVCGKGASQ 476 YDSHIFAN+GV L G+ HDTLL+SYVFESHR HDMDSLA RHL RKT+T+ +VCGKGASQ Sbjct: 407 YDSHIFANHGVTLRGIVHDTLLQSYVFESHRSHDMDSLALRHLNRKTMTFQDVCGKGASQ 466 Query: 477 IGFNEVPIERATEYAAEDAEVTLALHQAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERN 536 + F++V I RATEYAAEDA++TL LHQ M+P + D L F+YEKIE+PT+VVLQK+ERN Sbjct: 467 LCFDQVDIARATEYAAEDADITLQLHQRMFPHVAEDAGLSFVYEKIELPTAVVLQKVERN 526 Query: 537 GVLIDSERLGQQSHDLGKRMLEIEQQAYDLAGQPFNLNSPKQLGEILFGKLELPVVKKTA 596 GVLID L QSH+LGKRMLEIEQQAY+LAGQPFNL SPKQ+GEI F K++LPVVKKT Sbjct: 527 GVLIDPGLLATQSHELGKRMLEIEQQAYELAGQPFNLGSPKQIGEIFFEKMKLPVVKKTP 586 Query: 597 SGAPSTDEEVLQKLAEDYPLPKVLLDYRGLSKLKSTYTDKLPKMINPATGRVHTNYAQAV 656 SG+PSTDEEVLQKLAEDYPLPK+LL+YRGLSKLKSTYTDKLPKMI+PATGRVHTNYAQAV Sbjct: 587 SGSPSTDEEVLQKLAEDYPLPKLLLEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYAQAV 646 Query: 657 AVTGRLASNDPNLQNIPIRTAEGRRIREAFVAPEGSVIVSADYSQIELRIMAHISEDENM 716 AVTGRL+SNDPNLQNIPIR AEGRRIREAF+AP GSVIVSADYSQIELRIMAHISEDENM Sbjct: 647 AVTGRLSSNDPNLQNIPIRNAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHISEDENM 706 Query: 717 LKAFANNEDIHKATAAEIFGIAPEQVESEQRRYAKVINFGLIYGMSAFGLAGNLGIERAA 776 L+AFA EDIH+ATAAEIFG+A V SEQRRYAKVINFGLIYGMSAFGLAGNLGIERAA Sbjct: 707 LRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIERAA 766 Query: 777 AQMYIDKYFMRFSGVKRYMDETRMQAKAHGYVETVFGRRLWLPEINSPNGPRRQGAERAA 836 AQ YI+KYF RFSGVKRYMD+TR++AKA GYV+TVFGRRLWLPEINSPNGPRRQGAERAA Sbjct: 767 AQSYIEKYFYRFSGVKRYMDDTRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQGAERAA 826 Query: 837 INAPMQGTAADLIKLAMIAVQGWLEQAGLQTRMIMQVHDELVLEVPQQELDLVREKLPEL 896 INAPMQGTAADLIKLAMIAVQ WLE LQT+MIMQVHDELVLEVP+ EL LVR KLPEL Sbjct: 827 INAPMQGTAADLIKLAMIAVQDWLEAEKLQTKMIMQVHDELVLEVPETELALVRVKLPEL 886 Query: 897 MKNVAELKVPLLAEVGIGKNWDQAH 921 M+NVA+LKVPL+AEVG+GKNWD+AH Sbjct: 887 MRNVAQLKVPLIAEVGVGKNWDEAH 911 >gi|134093425|ref|YP_001098500.1| putative 5'-3' exonuclease [Herminiimonas arsenicoxydans] Length = 261 Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 132/242 (54%), Gaps = 2/242 (0%) Query: 5 LLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDAKGKT 64 LL +DG + + R + A + A A AL + R+L + ++V FD G T Sbjct: 4 LLAIDGLNIVRRVYEANVEPDTAAKA-DAALRHSLASFRKLLATHQPTHVLPAFDFGGHT 62 Query: 65 FRDDLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQATSA 124 +R DLYP Y+ R+ MPE L ++ +A + ALG ++ +EADDVI T ++ Sbjct: 63 WRHDLYPQYREKREPMPEVLRERLPDFYAQLSALGLKVISAPEVEADDVIATGVMRWLGE 122 Query: 125 GL-DTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIVDYLSLIGDTV 183 G D ++++ DKD+ L+ + + +E D V KFGVPPE + D L+L+GD Sbjct: 123 GRGDAVIASTDKDLHVLIAHGAVIWDHFKSEWHDSKWVEEKFGVPPEMLADLLALMGDVS 182 Query: 184 DNVPGVEKCGPKTAVKWLTAYGSLDGVMANADKITGVVGENLRRALDWLPQGRVLVTVKT 243 D++PGV K G KTA K L +YG+++ +MA A + +GE LR+ L R LV +KT Sbjct: 183 DSIPGVSKVGVKTAAKLLQSYGNIERIMAGAGILKDGLGERLRKDSAQLAISRQLVELKT 242 Query: 244 DC 245 D Sbjct: 243 DV 244 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.133 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,698,659 Number of extensions: 69705 Number of successful extensions: 234 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 231 Number of HSP's successfully gapped: 2 Length of query: 921 Length of database: 1,000,347 Length adjustment: 90 Effective length of query: 831 Effective length of database: 703,797 Effective search space: 584855307 Effective search space used: 584855307 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)