BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0434.p
         (145 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093550|ref|YP_001098625.1| hypothetical protein HEAR0268 [...    83   6e-18

>gi|134093550|ref|YP_001098625.1| hypothetical protein HEAR0268
           [Herminiimonas arsenicoxydans]
          Length = 136

 Score = 82.8 bits (203), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 16/129 (12%)

Query: 1   MKPSNVWFQQSLAAALLCVSAG-LAAPL-AVAQPAPPGLAAQPAPPPPELEKLEEGEPPA 58
           M+ S +W       +L+ +SA  +A PL A AQ  P   A   AP PP++E+LEEGE PA
Sbjct: 1   MRTSKLW-------SLVTISAAAIAMPLIASAQSTPQNKAF--APAPPQMERLEEGEAPA 51

Query: 59  VTIRKPGEDGRNQGNSIKERRDHGQTKEIEVKSGPSTYYIRPNPQLGGSTPGDAQSPPPS 118
           VTIR+P    +     I E++  G+  E++V++G +TYY +PN   G +  GD QS    
Sbjct: 52  VTIRQPDTQKK-----ITEKKSQGKVTEVKVQTGTTTYYAKPNDPAGSAMRGDGQSDTTR 106

Query: 119 SAQWKVGEF 127
             Q+++GEF
Sbjct: 107 PVQFQIGEF 115


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.307    0.130    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 242,211
Number of extensions: 8085
Number of successful extensions: 17
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 72
Effective length of database: 759,812
Effective search space: 54706464
Effective search space used: 54706464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 124 (52.4 bits)