BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0433.p
         (330 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093549|ref|YP_001098624.1| homoserine kinase [Herminiimona...   392   e-110

>gi|134093549|ref|YP_001098624.1| homoserine kinase [Herminiimonas
           arsenicoxydans]
          Length = 274

 Score =  392 bits (1007), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 184/269 (68%), Positives = 218/269 (81%)

Query: 62  VLTLFEKLHIEQLPFYLELMRHLAQRGIPVPEPVANDKGAIVNLLNDKPAAIVSKLEGQS 121
           +LT+FEKL  EQLPFYL LMRHLA+ G+ VP PVAN  G+I+N L+ KPA+IV+KLEG  
Sbjct: 1   MLTVFEKLTFEQLPFYLNLMRHLAEGGVSVPAPVANRNGSIINALHGKPASIVTKLEGHC 60

Query: 122 QLDPQPVHCAALGDMLARMHLAGKDFKILQPNLRGLAWWLETTPAVLPFLPPELGRLLAD 181
           QL PQPVHCAA+G MLA MHLA +DF+I QPNLRGL WW E TP V+P+L     +LLA 
Sbjct: 61  QLAPQPVHCAAVGAMLACMHLAAEDFEIRQPNLRGLEWWNEVTPIVMPYLSDSNEQLLAT 120

Query: 182 EVQYQKDFAATSDYRALPRGPVHADLFRNNAMFVGEQLSGIFDFYFAGVDTWLFDLAVTV 241
           E+  Q  FA +  +R LP GP+HADLFRNN MF GEQL+G FDFYFAG DTWLFD+AVTV
Sbjct: 121 EIISQNAFADSDVFRELPNGPIHADLFRNNVMFEGEQLTGFFDFYFAGCDTWLFDVAVTV 180

Query: 242 NDWCVELDTGVLDTSRSQAMLEAYRAVRPFSDAERVAWQPMLRAAALRFWLSRLYDFYLP 301
           NDWC++ D+G LD +R +AML+AY A+RPF+DAE+ AWQ MLRA+ALRFWLSRLYDF++P
Sbjct: 181 NDWCIDDDSGELDQARVRAMLDAYHAIRPFTDAEQGAWQTMLRASALRFWLSRLYDFHMP 240

Query: 302 REAEMLTPHDPTHFERILRLRINQAPPAL 330
           R+AEMLTPHDP HFERILRLRI Q  PAL
Sbjct: 241 RDAEMLTPHDPAHFERILRLRIAQTAPAL 269


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 657,358
Number of extensions: 27980
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 248
Effective length of database: 730,157
Effective search space: 181078936
Effective search space used: 181078936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)