BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0431.p (518 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093719|ref|YP_001098794.1| aerotaxis sensor receptor, sens... 581 e-167 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 333 2e-92 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 324 5e-90 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 316 2e-87 gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemo... 309 2e-85 >gi|134093719|ref|YP_001098794.1| aerotaxis sensor receptor, senses cellular redox state or proton motive force [Herminiimonas arsenicoxydans] Length = 553 Score = 581 bits (1498), Expect = e-167, Method: Compositional matrix adjust. Identities = 307/517 (59%), Positives = 380/517 (73%), Gaps = 4/517 (0%) Query: 2 NMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEEEELLGAPQNLIRHPDMPA 61 N+PVT E +L D ++VSKTD KG I+YVNP FIE SGF EEELLG P NLIRHPDMP Sbjct: 4 NLPVTNAEFILRDEMSLVSKTDTKGRISYVNPAFIEASGFTEEELLGKPHNLIRHPDMPE 63 Query: 62 EAFGDMWATIKAGLPWTGLVKNRSKNGDHYWVRANVTPIRESGQVVGYMSVRTKPERAAV 121 +AFGDMW T++ GLPWTG+VKNR KNGD YWV ANVTP+RE ++V YMSVR+KP R V Sbjct: 64 QAFGDMWQTLQQGLPWTGMVKNRRKNGDFYWVNANVTPVREEQKIVAYMSVRSKPSREQV 123 Query: 122 EAAEKLYASIRRGQAKGIALHRGEVVRTGVAGWLGKLSRMQLNTRLNLSMGVMLAI--QI 179 +A K+YA + G AKG+ + RGEVV +G+ G L L + L R+ +SM ++A+ + Sbjct: 124 DATAKIYARFKAGTAKGLMIKRGEVVASGLFGKLASLKNIGLGARIGISMSALIALIMTL 183 Query: 180 AVVVAGMVTLHQW--WISALAAVSALISIVQWIALRAALIKPLHQALDITHAITGGDLSV 237 A V W W A V A+I I+ W L ++++PL + + T I GGD + Sbjct: 184 GFAAATAVENAAWSYWYGAATIVGAVIVILTWAGLYFSIMRPLDRLISKTRVIAGGDFTA 243 Query: 238 RIESGRHDELGRLLASLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQA 297 + RHD++G+L +L+QMNVNL +++GD+R NV++IT+AT EIA GN+DLSRRTEAQA Sbjct: 244 NFDVDRHDDMGQLQQALQQMNVNLRSVMGDIRQNVDSITIATHEIAEGNMDLSRRTEAQA 303 Query: 298 ANLEETASSMHQLASTVRQNADHAVQANDLAGTASSIAMRGGDAVASTGTTMNEISQSSN 357 ++LEETASSM Q ASTV+QNAD+A QAN L +AS +A +GG V G TMNEIS S+ Sbjct: 304 SSLEETASSMQQFASTVKQNADNAQQANRLVLSASEVAGKGGAVVEKVGATMNEISASAK 363 Query: 358 KIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKL 417 +IVDIISLID IAFQTNILALNAAVEAARAGEQG+GFAVVA EVRSLAQRSA AA+EIK Sbjct: 364 RIVDIISLIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRSANAAREIKH 423 Query: 418 LIDDSVAKVEVGNRQVEQATRTMRDIVESVQRVSGIMGEIKEATQQQSAGINQVHEAITQ 477 LIDDSV KV VGNR V A TM IV SV+ V+ IM EI +A+++QS GI QV+ AI+ Sbjct: 424 LIDDSVDKVGVGNRLVGDAMATMEGIVNSVKSVTDIMNEITQASREQSDGIEQVNLAISH 483 Query: 478 MDASTQQNASLVEEAAGAAGSLQEQTVRLLQAISVFK 514 MD TQQNA+LVEEAA AA SL+EQT L Q+IS+FK Sbjct: 484 MDQVTQQNAALVEEAAAAAASLKEQTEHLSQSISIFK 520 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 333 bits (853), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 192/311 (61%), Positives = 237/311 (76%), Gaps = 1/311 (0%) Query: 206 IVQWIALRAALIKPLHQALDITHAITGGDLSVRIESGRHDELGRLLASLRQMNVNLTAII 265 ++ W+ R+ + KPL A+ + + GDL+ RI DE G+LL +L+ MN +LTA I Sbjct: 203 VLAWMLTRS-ITKPLDYAVSVARLVASGDLTGRITVDSKDETGQLLQALKDMNDSLTASI 261 Query: 266 GDVRSNVETITLATREIASGNLDLSRRTEAQAANLEETASSMHQLASTVRQNADHAVQAN 325 VRS V+TI A+ +IASGNLDLS RTE QA++LEETASSM +L STV+QNAD+A QAN Sbjct: 262 TQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQAN 321 Query: 326 DLAGTASSIAMRGGDAVASTGTTMNEISQSSNKIVDIISLIDSIAFQTNILALNAAVEAA 385 LA TAS +A +GG V+ TM+ I+ S+ KIVDII +ID IAFQTNILALNAAVEAA Sbjct: 322 QLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAA 381 Query: 386 RAGEQGRGFAVVASEVRSLAQRSAAAAKEIKLLIDDSVAKVEVGNRQVEQATRTMRDIVE 445 RAGEQGRGFAVVASEVRSLAQRSAAAAKEIK LIDDSV KV+ G++ V +A TM ++V+ Sbjct: 382 RAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVD 441 Query: 446 SVQRVSGIMGEIKEATQQQSAGINQVHEAITQMDASTQQNASLVEEAAGAAGSLQEQTVR 505 SV+RV+ IM EI A+Q+QSAGI QV++AI QMD TQQNA+LVEEAA AA SL EQ Sbjct: 442 SVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAAN 501 Query: 506 LLQAISVFKFN 516 L QA+S+FK + Sbjct: 502 LAQAVSIFKLD 512 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 324 bits (831), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 184/302 (60%), Positives = 232/302 (76%) Query: 215 ALIKPLHQALDITHAITGGDLSVRIESGRHDELGRLLASLRQMNVNLTAIIGDVRSNVET 274 ++ +PL A+++ + GGDL RIE DE G+LL +LR MN L + +VR+ +ET Sbjct: 215 SITRPLEYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIET 274 Query: 275 ITLATREIASGNLDLSRRTEAQAANLEETASSMHQLASTVRQNADHAVQANDLAGTASSI 334 I A+ +IA+GNLDLS RTE QA++LEETASSM +L STV+QNAD+A QAN LA +AS + Sbjct: 275 IATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGV 334 Query: 335 AMRGGDAVASTGTTMNEISQSSNKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGF 394 A +GG V+ TM +I+ S+ KIVDII +ID IAFQTNILALNAAVEAARAGEQGRGF Sbjct: 335 AEKGGVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGF 394 Query: 395 AVVASEVRSLAQRSAAAAKEIKLLIDDSVAKVEVGNRQVEQATRTMRDIVESVQRVSGIM 454 AVVASEVR+LAQRSAAAAKEIK LI DSV KV++G++ V +A TM ++V SV+RV+ IM Sbjct: 395 AVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIM 454 Query: 455 GEIKEATQQQSAGINQVHEAITQMDASTQQNASLVEEAAGAAGSLQEQTVRLLQAISVFK 514 EI A+Q+QSAGI QV++AI QMD TQQNA+LVEEAA AA SL EQ +L +A+SVFK Sbjct: 455 SEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFK 514 Query: 515 FN 516 + Sbjct: 515 LD 516 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 316 bits (809), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 201/380 (52%), Positives = 257/380 (67%), Gaps = 34/380 (8%) Query: 147 VRTGVAGWL------GKLSRMQLNTRL----NLSMGVMLAIQIAVVVAGMVTLHQWWISA 196 VR GVA + K + + TR N+S+G AI V++AG + W I Sbjct: 158 VRAGVAALIDLELREAKKAFEESQTRFVMVRNISIG---AIIFGVLLAGFMAF--WLIRL 212 Query: 197 LAAVSALISIVQWIALRAALIKPLHQALDITHAITGGDLSVRIESGRHDELGRLLASLRQ 256 +A +PLH A+ I ++ GDL+ +I +E G+LL +L+ Sbjct: 213 IA-------------------RPLHDAVQIARSVAAGDLTQQIHVNSTNETGQLLQALKD 253 Query: 257 MNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAANLEETASSMHQLASTVRQ 316 MN +L+ + VR ETIT+A+ EIASGN DLS RTEAQA +LEETASSM +L STVRQ Sbjct: 254 MNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASSMEELTSTVRQ 313 Query: 317 NADHAVQANDLAGTASSIAMRGGDAVASTGTTMNEISQSSNKIVDIISLIDSIAFQTNIL 376 NAD+A QAN L +A+ +A++GG V+ TM I SS KIVDII +IDSIAFQTNIL Sbjct: 314 NADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVIDSIAFQTNIL 373 Query: 377 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKLLIDDSVAKVEVGNRQVEQA 436 ALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LIDDSV KV+ G++ V+QA Sbjct: 374 ALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAGSKLVDQA 433 Query: 437 TRTMRDIVESVQRVSGIMGEIKEATQQQSAGINQVHEAITQMDASTQQNASLVEEAAGAA 496 TM++IV SV+ V+ IM EI A+Q+QS GI QV++AI+QMD TQQNA+LVE+AA AA Sbjct: 434 GSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNAALVEQAAAAA 493 Query: 497 GSLQEQTVRLLQAISVFKFN 516 S+Q+Q V L A+++FK + Sbjct: 494 QSMQDQAVELSGAVAIFKLD 513 >gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemotaxis sensory transducer [Herminiimonas arsenicoxydans] Length = 633 Score = 309 bits (791), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 175/311 (56%), Positives = 231/311 (74%) Query: 203 LISIVQWIALRAALIKPLHQALDITHAITGGDLSVRIESGRHDELGRLLASLRQMNVNLT 262 L++ + +R + PL QA + + GDL+ R+E+ R DE+G LL ++ + L Sbjct: 189 LLTACLYAGIRKTVTGPLAQATQLARQLATGDLTSRLETKRTDEIGLLLRAVNSIGQGLA 248 Query: 263 AIIGDVRSNVETITLATREIASGNLDLSRRTEAQAANLEETASSMHQLASTVRQNADHAV 322 ++ ++R ET+ TREIA+GNLDLS RTE QA++LEETAS+M ++ STV++NA +A Sbjct: 249 NVVWNIRHGTETLATETREIAAGNLDLSSRTEQQASSLEETASAMEEMTSTVKENAANAE 308 Query: 323 QANDLAGTASSIAMRGGDAVASTGTTMNEISQSSNKIVDIISLIDSIAFQTNILALNAAV 382 QAN LA TA+ +A++GG+ VA TM+ I+QSS KI DIIS+ID IAFQTNILALNAAV Sbjct: 309 QANALAHTAAEVAIKGGNVVAEVVHTMDSINQSSKKIADIISVIDGIAFQTNILALNAAV 368 Query: 383 EAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKLLIDDSVAKVEVGNRQVEQATRTMRD 442 EAARAGEQGRGFAVVASEVR+LAQRS+AAA+EIK LI+DSV+KV+ G++ V A TM + Sbjct: 369 EAARAGEQGRGFAVVASEVRNLAQRSSAAAREIKTLIEDSVSKVQSGSKLVAHAGATMDE 428 Query: 443 IVESVQRVSGIMGEIKEATQQQSAGINQVHEAITQMDASTQQNASLVEEAAGAAGSLQEQ 502 +V S+QRV IMGEI A+++QS GI QV++AI QMD TQQNA+LVE+AA +A SLQ Q Sbjct: 429 VVSSIQRVDNIMGEISSASREQSIGIEQVNQAIAQMDQVTQQNAALVEQAAASAESLQNQ 488 Query: 503 TVRLLQAISVF 513 T L +SVF Sbjct: 489 TTELNNVVSVF 499 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.128 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 811,826 Number of extensions: 30233 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 171 Number of HSP's successfully gapped: 15 Length of query: 518 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 432 Effective length of database: 716,977 Effective search space: 309734064 Effective search space used: 309734064 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)