BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0430.p
         (490 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093498|ref|YP_001098573.1| glycerol kinase [Herminiimonas ...   137   1e-33

>gi|134093498|ref|YP_001098573.1| glycerol kinase [Herminiimonas
           arsenicoxydans]
          Length = 498

 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 129/458 (28%), Positives = 201/458 (43%), Gaps = 33/458 (7%)

Query: 3   LGIDLGTSEVKAVVIDDQGDLLALAGSTLNVTRAHPRWSEQAPADWWQATCDTVDKLRTQ 62
           L ID GT+  +A++ +  G +  +           P W E      W +       +  Q
Sbjct: 6   LAIDQGTTSSRAILFNHAGQIHGMTQQEYPQIFPAPGWVEHDANAIWHSQL----AVAQQ 61

Query: 63  LGRERF---AGIRAIGLSGQMHGAVLLD-EDDEVLRPAILWSDSRSAPECAEL--DRRAP 116
           + +E+    A I AIG++ Q    VL D +  E +  AI+W D R+A  C +L  D +AP
Sbjct: 62  VLKEQHLSAADIAAIGITNQRETTVLWDRQTGEPIAHAIVWQDRRTAALCDQLRADGKAP 121

Query: 117 RLHGIAGNLAMPGFTAPKLLWVARHEPQLFARIATVLLP----KDWLRLKMTGRKVSDPS 172
                 G +    F+  KL W+  H P    R     L       WL  K++G  V+D S
Sbjct: 122 LFQQKTGLVLDSYFSGTKLKWLLDHTPGARVRAERGELAFGTIDSWLIFKLSGNHVTDTS 181

Query: 173 DAAGTLWLDVEGRNWSDELLAASGMRREQMPALVDGSAVSGTLLPDVARAWGLGENVIVA 232
           +A+ TL  ++  + W DELLA   +    +PA+V  S + G     +      G+++ +A
Sbjct: 182 NASRTLLFNIHTKQWDDELLALLDIPHSLLPAIVPSSGIVGQTYTSL-----FGQSIPIA 236

Query: 233 GGAGDGAASAVGIGAVNPGDG--------FLSLGTSGVLFVVNDRFRPNPGRAIHAFCHT 284
           G AGD  A+  G     PG          F+ L T       ++      G  +      
Sbjct: 237 GIAGDQQAATFGQACHRPGMAKNTYGTGCFMLLNTGTQAIASHNNLLTTIGWTLGNDVDA 296

Query: 285 LPQRWHQMSVMLSAASCLRWFCRLCSVDEKSLLAEIAELDHEARSNA-PLFLPYLSGERT 343
                 + SV ++ A  ++W      + + S  +++  L      N   +F+P  SG   
Sbjct: 297 RTDYMLEGSVFMAGA-IIQWLRDGLGIIQHS--SDVEALATSVPDNGGVVFIPAFSGLGA 353

Query: 344 PHNDPYATGVFHGLTPEHQRAALGYAVLEGVAFGMVDGLDALRA-AGTDVAELSLVGGGA 402
           P+ DPYA G   G+T    +A +  A LE +A+  VD L+A++  A   + EL + GG A
Sbjct: 354 PYWDPYARGTIVGMTRGSNKAHIARAALESIAYQTVDVLEAMQKDAQILLQELRVDGGAA 413

Query: 403 RSAYWAQLLADALAVRIVTHVGSEAGGALGAARLAWLA 440
           R+    Q  AD L V ++  V +E   ALGAA LA LA
Sbjct: 414 RNDLLMQFQADMLNVPVIRPVVTET-TALGAAYLAGLA 450


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 963,716
Number of extensions: 39581
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 405
Effective length of database: 720,272
Effective search space: 291710160
Effective search space used: 291710160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)