BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0428.p (372 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 257 6e-70 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 212 2e-56 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 172 4e-44 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 145 4e-36 gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-b... 142 4e-35 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 257 bits (657), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 131/291 (45%), Positives = 186/291 (63%), Gaps = 3/291 (1%) Query: 1 MAAVSIRNLAKRYDDNEVMRDINLDIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 MA + IRNL +R+ DN V+ +I+L IE GEF +GPSGCGK+TLLRMIAG +E G + Sbjct: 1 MALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKI 60 Query: 61 DIGARRMNDVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 + + VP +R V VFQ+YAL+PHM++ N+AF L++A K+EI V A + Sbjct: 61 LLDGVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALED 120 Query: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 + + R P LSGGQRQRV+I RA+ +P + L DEPLS LDA LR +M++E L Sbjct: 121 VRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQ 180 Query: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN 240 ++ T +YVTHDQ EA+ L+ +I V+++G IEQ+ P ++Y +P +RFVA FIG+ N Sbjct: 181 KEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIGT--CN 238 Query: 241 FIDGAVAAIQADGVQVQLPGGGLQWAAVDGGALQVGQKVTLGVRPEHLNIA 291 DG V I D + + +PG G A G +QVG K T+ +RPE + ++ Sbjct: 239 LFDGTVTQIAGDTMLLDVPGMGAVKALTVAG-VQVGSKGTIALRPEKIQVS 288 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 212 bits (540), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 104/263 (39%), Positives = 169/263 (64%), Gaps = 8/263 (3%) Query: 3 AVSIRNLAKRYDDNEVMRDINLDIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDLDI 62 ++ ++N+ K++ + + D++L+ GE +GPSGCGK+TLLR+IAGLE+ G + + Sbjct: 2 SIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLL 61 Query: 63 GARRMNDVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKI----AGKSKAEIDAAVQHAA 118 + +R V VFQ YAL+ HM++++N+AFGL++ S++ I V Sbjct: 62 DGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLL 121 Query: 119 KILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAK 178 +++ +D L DR P LSGGQRQR+A+ RA+ +P V L DEP LDA +R ++R + Sbjct: 122 ELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRR 181 Query: 179 LHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPK 238 LHD+L T I+VTHDQ EA+ +AD+IV++++G +EQ+G+P+ +Y++PA+ FV GF+G+ Sbjct: 182 LHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFLGN-- 239 Query: 239 MNFIDGAV--AAIQADGVQVQLP 259 +N G V +Q+ G+ P Sbjct: 240 VNLFRGRVHEGVLQSSGIAFDAP 262 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 172 bits (435), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 139/226 (61%), Gaps = 10/226 (4%) Query: 16 NEVMRDINLDIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDLDIGARRMNDV----P 71 +E++ ++ ++ G+ +G SGCGK+T+LR IAG E +++G + +G + +++ Sbjct: 31 HEIVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGKEISNAHFTAT 90 Query: 72 ASKRGVAMVFQSYALYPHMSLYDNMAFGLK--IAGKSKAEIDAAVQHAAKILHIDHLLDR 129 R + +VFQ YAL+PH+S+ DN+ FGL+ A + +A I A + ++ + + Sbjct: 91 PETRQIGVVFQDYALFPHLSVADNVGFGLRKLAAPERQARIAALL----TLVGLASQGKK 146 Query: 130 KPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLHDDLKTTMIY 189 P LSGGQ+QRVA+ RA+ QP + L DEP SNLD LR ++ E + ++ TT + Sbjct: 147 FPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVL 206 Query: 190 VTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIG 235 VTHDQ EA +AD+I V+ +G I Q S LYH PANRFVA FIG Sbjct: 207 VTHDQHEAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVADFIG 252 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 145 bits (365), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 129/214 (60%), Gaps = 7/214 (3%) Query: 19 MRDINLDIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDLDIGARRMNDVPASKRGVA 78 + DINL + GEF+ +G SGCGKSTLL +IAGL + + G L G R + P+ +R A Sbjct: 28 LTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGGMLLCGNREIAG-PSPER--A 84 Query: 79 MVFQSYALYPHMSLYDNMAFGL-KIAGK--SKAEIDAAVQHAAKILHIDHLLDRKPRALS 135 +VFQ+++L P ++ Y+N+ + ++ GK KA++ A + A ++ + H ++P +S Sbjct: 85 VVFQNHSLLPWLTCYENVYLAVERVFGKVEGKAKLRARTRAALSLVGLTHAEQKRPNEIS 144 Query: 136 GGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLHDDLKTTMIYVTHDQI 195 GG +QRV I RA++ +P V L DEP LDA R ++ E K+ +T++ VTHD Sbjct: 145 GGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGSTVVMVTHDVD 204 Query: 196 EAMTLADKIVVLSEGRIEQVGSPQQL-YHHPANR 228 EA+ L+DKIV+L+ G +G ++ HP R Sbjct: 205 EAVLLSDKIVMLTNGPSATIGEILEVKLAHPRER 238 >gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 362 Score = 142 bits (357), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 76/197 (38%), Positives = 113/197 (57%), Gaps = 8/197 (4%) Query: 31 FVVFVGPSGCGKSTLLRMIAGLEEISDGDLDIGARRMND------VPASKRGVAMVFQSY 84 G SG GK+T LR+IAGLE +D L++ D +P +R + VFQ Sbjct: 32 ITALFGASGSGKTTCLRVIAGLERAADVYLEVNGEVWQDDAHNIFLPTHQRPLGYVFQEA 91 Query: 85 ALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKILHIDHLLDRKPRALSGGQRQRVAI 144 +L+ H+++ N+ +G++ KS + ++ HA +L I HLL RKP LSGG+RQRVAI Sbjct: 92 SLFAHLNVQRNLEYGMRRIAKSARHV--SLDHAVSLLDIGHLLQRKPDKLSGGERQRVAI 149 Query: 145 GRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLHDDLKTTMIYVTHDQIEAMTLADKI 204 RA+ P + L DEPL+ LDA + ++ +LHD+L ++YV+H E LAD + Sbjct: 150 ARALATSPRILLMDEPLAALDAKRKAEIMPYLERLHDELDIPVLYVSHSADEVARLADHL 209 Query: 205 VVLSEGRIEQVGSPQQL 221 V+L GR+ G+ Q L Sbjct: 210 VLLETGRVIASGATQDL 226 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 684,055 Number of extensions: 27784 Number of successful extensions: 268 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 49 Length of query: 372 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 289 Effective length of database: 726,862 Effective search space: 210063118 Effective search space used: 210063118 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)