BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0418.p
         (567 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095057|ref|YP_001100132.1| putative signal peptide [Hermin...    56   4e-09

>gi|134095057|ref|YP_001100132.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 560

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 115/266 (43%), Gaps = 16/266 (6%)

Query: 5   LTFSSSRLVLMLGLPLVCALAQAQTAVNQEQL--QRERERALRQQQESRPDVNLGTPAPN 62
           + F  S+ VL LGL +VC +A AQT  N   L  Q ERE A     +  P++ +   A  
Sbjct: 1   MNFHFSKAVLPLGL-VVCGVAFAQTPPNAGSLNQQIEREHAPLAPAKPIPEIRIEQDA-- 57

Query: 63  AVQQAFPEHEQPCRVISAITLEGDQAERFRFALDSVTGPQGAVGRCLGSQGVNLVLAKVE 122
           A   A  +H++   ++ ++ + G         LD VTG   +  R L    +  + +K+ 
Sbjct: 58  APTAAVSDHQKI--LVRSLQVTGAHVYAEAALLD-VTGFSAS--RELTLSELRGMASKIA 112

Query: 123 SAIVERGYTTTRVLARAQDLSTGQLRLTVVPGRVRHIRFAADADARGTAFNAL--PISPG 180
                RGY   +    AQD+  G + + V+ G    +      +      N L   ++  
Sbjct: 113 RYYHVRGYLLAQAYLPAQDIKDGVVTIAVLEGHYGKVTVRNSTNLSDDLANGLLSGLNSS 172

Query: 181 DILNLRDVEQGLENFKRVPTAQADIKITPSEDEGAQPGDSDLVIQYQQAFPFRLSATLDD 240
           D +++  +E  L     +P       + P    GA  G SDL++          +  +D+
Sbjct: 173 DAVSIAPLETSLLLLSDLPGVNVRSTLVP----GASVGASDLIVDVTPGQRVTGAVDVDN 228

Query: 241 GGARSTGKYQVGLTLSYDNWWTLNDL 266
           GG R TG ++VG T++ +N   L D+
Sbjct: 229 GGNRYTGAHRVGATVNINNPTGLGDV 254


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,051,215
Number of extensions: 43774
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 480
Effective length of database: 713,682
Effective search space: 342567360
Effective search space used: 342567360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)