BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0417.p (759 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093547|ref|YP_001098622.1| DNA helicase II [Herminiimonas ... 1326 0.0 gi|134096520|ref|YP_001101595.1| Rep helicase, a single-stranded... 345 6e-96 gi|134095383|ref|YP_001100458.1| DNA helicase II [Herminiimonas ... 159 6e-40 gi|134095190|ref|YP_001100265.1| putative DNA helicase II [Hermi... 100 3e-22 gi|134093954|ref|YP_001099029.1| putative exonuclease V [Hermini... 83 6e-17 >gi|134093547|ref|YP_001098622.1| DNA helicase II [Herminiimonas arsenicoxydans] Length = 762 Score = 1326 bits (3431), Expect = 0.0, Method: Compositional matrix adjust. Identities = 639/761 (83%), Positives = 704/761 (92%), Gaps = 3/761 (0%) Query: 1 MQNLLHNLNEEQLAAVTLPAQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPSGILAVTF 60 MQNLLHNLN EQLAAVTLPAQ ALILAGAGSGKTRVLTTRIAWLIQTGQVSP+GILAVTF Sbjct: 1 MQNLLHNLNPEQLAAVTLPAQPALILAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTF 60 Query: 61 TNKAAKEMTARLSAMLPINTRGMWIGTFHGLCNRLLRAHHKDAGLPQTFQILDTQDQLSA 120 TNKAAKEM RLSAM+PINTRGMWIGTFHGLCNRLLRAH++DA LPQTFQILD+QDQLS Sbjct: 61 TNKAAKEMMTRLSAMMPINTRGMWIGTFHGLCNRLLRAHYRDAALPQTFQILDSQDQLSM 120 Query: 121 IKRLLKQMNVDDEKYPPRNLMYFINSAKDQGLRAKDVDAYDDYNRKFVELYELYDQQCQR 180 IKRLLK N+DDEKYPPRNLMYFIN AKD GLRA+DV+A+DDYNRK VELYE+YDQQCQR Sbjct: 121 IKRLLKANNIDDEKYPPRNLMYFINGAKDNGLRAQDVEAHDDYNRKMVELYEIYDQQCQR 180 Query: 181 EGVVDFAELLLRTYELLSRNQPLREHYQSRFRHILVDEFQDTNDLQYKWLKLMAGQHGAV 240 EGVVDFAELLLRTYELLSRNQPLREHYQSRF+HILVDEFQDTN+LQY WLKLMAG GAV Sbjct: 181 EGVVDFAELLLRTYELLSRNQPLREHYQSRFKHILVDEFQDTNNLQYNWLKLMAGTQGAV 240 Query: 241 FAVGDDDQSIYAFRGANVGNMQAFEQEFHVQNLIKLEQNYRSHGHILDTANELIANNSKR 300 FAVGDDDQSIYAFRGANVGNM AFE+EF V+NLIKLEQNYRSHGHILDTAN LIANN+KR Sbjct: 241 FAVGDDDQSIYAFRGANVGNMSAFEREFKVENLIKLEQNYRSHGHILDTANTLIANNTKR 300 Query: 301 LGKNLRTDAGHGEQVRVYEATSDLQEAQWIIEQVKDLIAEGWARSEIAILYRSNAQSRVL 360 LGKNL TDAGHGEQVR++E+TSDLQEAQWIIE+ K LIAEG RSEIA+LYRSNAQSRV+ Sbjct: 301 LGKNLHTDAGHGEQVRIFESTSDLQEAQWIIEETKSLIAEGGTRSEIAVLYRSNAQSRVI 360 Query: 361 EHALFSSAIPYRVYGGQRFFERAEIKHAIAYLQLMDNLHNDSAFLRVVNFPTRGIGAKAM 420 EHALFS+ IPYRVYGGQRFFERAE+KHAIAYLQLMDNLHNDSAFLRVVNFPTRGIGA+++ Sbjct: 361 EHALFSAGIPYRVYGGQRFFERAEVKHAIAYLQLMDNLHNDSAFLRVVNFPTRGIGARSL 420 Query: 421 ESLQDAARQYGCSLYAAVPYVAGKAGSSLNAFIKLIEGARFETQHLPLPETVKVVLDLSG 480 E LQDAARQYG SLYAAVPY++GKAG+SL AF+KLIEGARFETQHLPLPE V+VVLD SG Sbjct: 421 EQLQDAARQYGISLYAAVPYISGKAGTSLGAFVKLIEGARFETQHLPLPEMVQVVLDASG 480 Query: 481 LITHYRNEKEGADRIENLEQLVSAATLFVSEEGYGLDAPAFLGPQAQAAAGTAITTADGV 540 LITHY+ EKEGADRIENLEQLVSAATLFVSEEG+G DAPA +GP ++ AG AITT DG+ Sbjct: 481 LITHYQKEKEGADRIENLEQLVSAATLFVSEEGFGHDAPALMGPTSKQMAGPAITTQDGI 540 Query: 541 EVLDADAPLVTIMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFDAVFITGM 600 EVLDADAPL +MSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFDAVFITG+ Sbjct: 541 EVLDADAPLPAVMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFDAVFITGL 600 Query: 601 EEGLFPHENSAKEEGGVEEERRLMYVAITRARKRLFMTFSQTRMLHGQTRYNMRSRFFDE 660 EEGLFPHENS KEEGGVEEERRLMYVAITRA++RL+++FSQTRMLHGQ RYNM+SRFFDE Sbjct: 601 EEGLFPHENSQKEEGGVEEERRLMYVAITRAKRRLYISFSQTRMLHGQMRYNMKSRFFDE 660 Query: 661 LPEQSIKWLSPKI--AQHHWFANPKPAWDEVPEAGNNKIAQSFSRQTDSGWRIGQNVSHA 718 +PE S+KWLSPK+ H W+A+PK AW++ AG+N+IAQ+ + +D GWRIG++V+HA Sbjct: 661 MPEDSLKWLSPKVHPPAHQWYAHPKAAWEDALGAGSNRIAQNIVK-SDIGWRIGESVAHA 719 Query: 719 KFGEGVIVNIEGGGGAARAQINFGKFGMKLLDLSVAKLEKI 759 KFGEGVIVNIEG GG+ARA INFG+ GMKLLDLS+AKL+K+ Sbjct: 720 KFGEGVIVNIEGSGGSARAHINFGRHGMKLLDLSIAKLDKL 760 >gi|134096520|ref|YP_001101595.1| Rep helicase, a single-stranded DNA-dependent ATPase [Herminiimonas arsenicoxydans] Length = 684 Score = 345 bits (884), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 244/673 (36%), Positives = 355/673 (52%), Gaps = 53/673 (7%) Query: 8 LNEEQLAAVTLPAQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPSGILAVTFTNKAAKE 67 LN Q A+ L+LAGAGSGKTRV+T +IA LI+ + A+TFTNKAA E Sbjct: 12 LNAPQREAIKYMDGPCLVLAGAGSGKTRVITQKIAHLIEDCGYEARHVAALTFTNKAALE 71 Query: 68 MTARLSAML--PINTRGMWIGTFHGLCNRLLRAHHKDAGLPQTFQILDTQDQLSAIKRLL 125 M R++ +L P + + + TFH L ++LR K+ GL F I+D+ D S L+ Sbjct: 72 MQERIAKLLKEPKQAKQLTVSTFHSLGVKILRQEAKELGLKDRFSIMDSDDCFS----LV 127 Query: 126 KQMNVDDEKYPPRNLMYFINSAKDQGLRAKDV---DAYDDYNRKFVELYELYDQQCQREG 182 + M + +K R + I+ K+ GL D A D+ + +Y Y Sbjct: 128 QDMAITTDKQLVRRIQTAISLWKN-GLIDPDAALNQAKDEDEAQAARIYRSYVATLSAYQ 186 Query: 183 VVDFAELLLRTYELLSRNQPLREHYQSRFRHILVDEFQDTNDLQYKWLKLMA---GQHGA 239 VDF +L+ EL N+ +R+ +Q + R++LVDE+QDTN QY+ +KL+ G+ Sbjct: 187 AVDFDDLIRLPVELFRGNEAVRDKWQRKLRYLLVDEYQDTNTCQYELVKLLVTGIGKKPM 246 Query: 240 VFAVGDDDQSIYAFRGANVGNMQAFEQEFHVQNLIKLEQNYRSHGHILDTANELIANNSK 299 AVGDDDQ+IYA+RGA + N++ + +F ++KLEQNYRS IL AN +I NN K Sbjct: 247 FTAVGDDDQAIYAWRGATIENLKQLQVDFPDLKVVKLEQNYRSSTRILQAANSVIGNNPK 306 Query: 300 RLGKNLRTDAGHGEQVRVYEATSDLQEAQWIIEQVKDLIAEGWAR-SEIAILYRSNAQSR 358 K+L ++ G G+ V+V D QEA+ I + E A+ S+ AILYR N QSR Sbjct: 307 LFEKSLWSEHGLGDPVKVLGMQDDDQEAEQIAIMLSAHRFERRAKFSDYAILYRGNHQSR 366 Query: 359 VLEHALFSSAIPYRVYGGQRFFERAEIKHAIAYLQLMDNLHNDSAFLRVVNFPTRGIGAK 418 V+E AL IPY + GGQ FF+RAEIK I+YL+L+ N +D AF+R V P RG+G Sbjct: 367 VIEQALRKERIPYTISGGQSFFDRAEIKDIISYLRLVANQDDDPAFIRAVTTPKRGVGQS 426 Query: 419 AMESLQDAARQYGCSLYAAVPYVAGKAGSSLNAFIKLIEGARFETQHLPLPETVKVVLDL 478 +E+L A Q+ CSL+ AV F +E E Q PL E + L Sbjct: 427 TLETLGAFAGQWQCSLFEAV-------------FKGGLESKLAERQLTPLREFGNFINQL 473 Query: 479 SGLITHYRNEKEGADRIENLEQLVSAATLFVSEEGYGLDAPAFLGPQAQAAAGTAI--TT 536 H E + A +E++ + ++ E Y D F QAQ+ I TT Sbjct: 474 EA---HAHREGQAASLLEDMMKEINY-------EAYLYD--NFDDRQAQSKWQNVIDFTT 521 Query: 537 ---ADGVEVLDADAPLVTIMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFD 593 G D + P +++ LE D + DA+++ T+H++KGLEF Sbjct: 522 WLKEKGSGGKDGNDPEKSLLDLTQMVALMTMLEGKDEEP----DAVRMSTLHASKGLEFP 577 Query: 594 AVFITGMEEGLFPHE---NSAKEEGG--VEEERRLMYVAITRARKRLFMTFSQTRMLHGQ 648 VF+ G+EEG+ PH+ ++ E G +EEERRLMYV ITRA++ L +++ + R + Sbjct: 578 HVFLVGVEEGILPHKGDPDAPIETLGARIEEERRLMYVGITRAQRSLHVSWCKKRKRARE 637 Query: 649 TRYNMRSRFFDEL 661 + SRF E+ Sbjct: 638 HVHCDISRFIKEM 650 >gi|134095383|ref|YP_001100458.1| DNA helicase II [Herminiimonas arsenicoxydans] Length = 975 Score = 159 bits (401), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 128/427 (29%), Positives = 200/427 (46%), Gaps = 42/427 (9%) Query: 9 NEEQLAAVTLPAQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPSGILAVTFTNKAAKEM 68 N +Q+ A+ LI+AG GSGKT L RI +LI ++P + VTFT+KAA+E+ Sbjct: 17 NAQQIEAILATDGPVLIIAGPGSGKTFTLVERIVYLITNKGIAPESLFVVTFTDKAAREL 76 Query: 69 TARLSAMLP-----INTRGMWIGTFHGLCNRLLRAHHKDAGLPQTFQILDTQDQLSAIKR 123 T R+S L N M++GTFH +C RLL + + L ++F + D DQ + + Sbjct: 77 TTRISNRLAELGIQFNLNEMYLGTFHSICLRLLEDYREFTRLKRSFTLFDQFDQQYFLYQ 136 Query: 124 LLK--------QMNVDDEKY----PPRNLMYFINSAKDQGLRAKDVDAYDDYN-RKFVEL 170 +K Q+ + D++ NL+ ++N ++ L A + A + R Sbjct: 137 RIKDFRELPDAQLVIGDDQTGRWAQSENLLKWLNKVSEEALDAATLAAAPEPEIRALATC 196 Query: 171 YELYDQQCQREGVVDFAELLLRTYELLSRNQPLREHYQSRFRHILVDEFQDTNDLQYKWL 230 + Y + +DF+ + +LL + + + + H++VDE+QDTN +Q + L Sbjct: 197 FAKYQELLHEHNSLDFSGIQYEALQLLEKRPEVLAQLRGKLTHLMVDEYQDTNTIQERIL 256 Query: 231 KLMAGQHGAVFAVGDDDQSIYAFRGANVGNMQAFEQEFHVQNL--IKLEQNYRSHGHILD 288 L+AG+ + VGDDDQ +Y FRGA + N+ F F +KL NYRSH I+ Sbjct: 257 LLLAGERCNLCVVGDDDQGLYRFRGATIRNILEFPALFDDGQCKQVKLTVNYRSHPDIIR 316 Query: 289 TANELI-------ANNSKRLGKNL--RTDAGHGEQVRVYEATSDLQE--AQW---IIEQV 334 NE + R K + R D V A SD ++ W ++ + Sbjct: 317 FYNEWMKEQVWDDGTRVFRFAKQIVPREDEFPDLPAAVRLAASDDKDDTTNWHAEVLAFL 376 Query: 335 KDLIAEG----WARSEIAILYRSNAQSRVLEHALFSSA--IPYRVYGGQRFFERAEIKHA 388 L A G W +++A LYRS +V+ A F A +P FFER EI+ Sbjct: 377 NGLKASGQLADW--NQVAFLYRSVKNDKVVALARFLEAQGVPVFSPRSNMFFEREEIRLM 434 Query: 389 IAYLQLM 395 I L + Sbjct: 435 IGALIFL 441 >gi|134095190|ref|YP_001100265.1| putative DNA helicase II [Herminiimonas arsenicoxydans] Length = 588 Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 104/388 (26%), Positives = 181/388 (46%), Gaps = 43/388 (11%) Query: 9 NEEQLAAVTLPAQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPSGILAVTFTNKAAKEM 68 N QLAA ++LAG GSGKT+ L ++A ++ +P G+ +T++ + A+E+ Sbjct: 4 NPGQLAAYNSQGH-CVVLAGPGSGKTKTLVLKLARILAEDVEAPRGVACITYSQECAREL 62 Query: 69 TARLSAMLPINTRGMWIGTFHGLCNR-LLRAHHKDAGLPQTFQILDTQDQLSAIKRLLKQ 127 R+ + ++IGT HG C R LL + + AGLP +F + ++S RLLKQ Sbjct: 63 ARRIENLGLQQAPNLFIGTVHGFCLRHLLMPYGRLAGLPISFPLSVATQRVS--DRLLKQ 120 Query: 128 MN--VDDEKYPPRNLMYFINSAKDQGLRAKDVDAYDDYNRKFV---------ELYELYDQ 176 + + +P + + D G + V NR V E Y+ Sbjct: 121 TGDALFGQNHPYKVI--------DLGRHRRSV-----LNRNSVAWRSEEELAAWAEAYEA 167 Query: 177 QCQREGVVDFAELLLRTYELLSRNQPLREHYQSRFRHILVDEFQDTNDLQYKWLKLMAGQ 236 + EG++D+ ++++ L++ + + Q++F + VDE+QD ++ +K +A Sbjct: 168 ALRDEGLIDYDDMVVFGQRLIAEHDWVLPLVQAKFPVLAVDEYQDLGVALHRIVKRLAFD 227 Query: 237 HGA-VFAVGDDDQSIYAFRGANVGNMQAFEQEFHVQNLIKLEQNYRSHGHILDTANELIA 295 G +FAVGD DQSIY F GA+ + ++ ++L+ NYRS I+ TA+E+ Sbjct: 228 GGVRLFAVGDADQSIYGFTGADGALLMELAARRDIEP-VQLQLNYRSGAGIV-TASEMAL 285 Query: 296 NNSKRLGKNLRTDAGHGEQVRVYEATSDLQEAQWIIEQVKDLIAEGWARS--EIAILYRS 353 ++ + E V +D Q A + + + +A R+ +IAILY+ Sbjct: 286 GEARGYQASDPARQTTIEFVLRPGGMAD-QAAHAVAQIIPAALASKPGRTLGDIAILYKD 344 Query: 354 NAQSRV---------LEHALFSSAIPYR 372 + L+H +A PYR Sbjct: 345 YRAGDIVAEAVATGGLDHIRVDTAAPYR 372 Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 4/86 (4%) Query: 577 DALQLMTVHSAKGLEFDAVFITGMEEGLFPHENSAKEEGGVEEERRLMYVAITRARKRLF 636 D L L+T+HSAKG E+D V + G++ G P N E+ + E RRL YV +TRAR + Sbjct: 497 DHLNLLTLHSAKGCEYDVVIMVGLDLGNLPWRNETPEK--LRESRRLFYVGLTRARDEVH 554 Query: 637 MTFSQ-TRMLHGQTRYNMRSRFFDEL 661 M +S +G R+ RS F DEL Sbjct: 555 MLYSGFVDGRYGPMRFG-RSPFLDEL 579 >gi|134093954|ref|YP_001099029.1| putative exonuclease V [Herminiimonas arsenicoxydans] Length = 1096 Score = 82.8 bits (203), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 113/494 (22%), Positives = 192/494 (38%), Gaps = 92/494 (18%) Query: 172 ELYDQQCQREGVVDFAELLLRTYELLSRNQP---LREHYQSRFRHILVDEFQDTNDLQYK 228 E Y + V DFA+L + Y LL+ + L+ +R+RH+L+DEFQDTN LQ+ Sbjct: 371 ETYQAVKAEQRVFDFADLEWQAYRLLTNEEHAAYLQSRLDARYRHVLLDEFQDTNPLQWS 430 Query: 229 WLKLMAGQHG------AVFAVGDDDQSIYAFRGANVGNMQAFEQEFHVQ--NLIKLEQNY 280 ++ +G ++F VGD QSIY FR A A ++ Q + ++ Q Sbjct: 431 IVQAWLNAYGDDADKPSMFVVGDPKQSIYRFRRAEPRVFSAAKETLVAQGADFLRTNQTR 490 Query: 281 RSHGHILDTAN-ELIANNSKRLGKNLRTDAG---------HGEQVRVYEATSDLQE---- 326 R+ I+D N +AN + L G +Q +V + L++ Sbjct: 491 RNAAGIVDVLNASFVANPIYQPQTTLEQSPGAVWQLPLVQQDKQEKVVWSPVQLRDPLTT 550 Query: 327 -----------------AQWIIEQVKDLIAEGWARSEIAILYRSNAQSRVLEHALFSSAI 369 A I++ K+L +E W S++ +L + R E AL + I Sbjct: 551 PREEEEDARRLEEGRAVALAILQARKELKSERW--SDVMLLVKKRTHLRAYERALREAGI 608 Query: 370 PYRVYGGQRFFERAEIKHAIAYLQLMDNLHNDSAFLRVVNFPTRGIGAKAMESLQD-AAR 428 P+ E E+ IA L + H++ A V+ P G + +L + + Sbjct: 609 PFASDKRGGLLESLEVADLIALLNFLITPHDNLALAHVLKSPIMAAGDDELIALAERREK 668 Query: 429 QYGCSLYAAVPYVAGKAGSSLNAFIKLIEGARFETQHLPLPETVKVVLDLSGLITHYRNE 488 + L A V ++ A L L+E LP+ + + +L ++ Y Sbjct: 669 TWWLRLQAEVTELSSPA---LLRAAGLLEKWLHLAPRLPVHDLLDRILHEGDVVARYAQT 725 Query: 489 KEGADRIENLEQLVSAATLFVS-EEGYGLDAPAFLGPQAQAAAGTAITTADGVEVL---- 543 R + L + + L ++ + G P F+ D + L Sbjct: 726 ASPLVRGQVLGNIEAFTELALNLDAGRYPSLPKFI---------------DALRRLQKSA 770 Query: 544 DADAPLVTIMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFDAVFITGMEEG 603 D+DAP + A DA++++T+H AKGLE V + Sbjct: 771 DSDAP-------------------DEADIDAALDAVRILTIHGAKGLEAPIVVLLDAN-- 809 Query: 604 LFPHENSAKEEGGV 617 H + A+++ GV Sbjct: 810 ---HSDGARDDVGV 820 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,305,285 Number of extensions: 51362 Number of successful extensions: 170 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 7 Length of query: 759 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 670 Effective length of database: 707,092 Effective search space: 473751640 Effective search space used: 473751640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)