BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0414.p
         (164 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094729|ref|YP_001099804.1| putative stress response DNA-bi...    83   6e-18

>gi|134094729|ref|YP_001099804.1| putative stress response
           DNA-binding protein (Dps) [Herminiimonas arsenicoxydans]
          Length = 181

 Score = 83.2 bits (204), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 3   KKNVAAPSIN-IGINDKDRKKIADGLSKLLADTYTLYLKTHNFHWNVTGPMFNTLHLMFE 61
           K+   AP I    +N K  K IA  ++ +LAD + LYLKT NFHW+++GP F   HL+ +
Sbjct: 12  KRRQIAPLITPSDLNAKATKDIAGAMNGVLADVFALYLKTKNFHWHMSGPHFRDYHLLLD 71

Query: 62  GQYNELALAVDLIAERIRALGYPAPGSYKEFAKLSSIPEADG---VPNAQEMIAQLVAGQ 118
            Q  ++    DLIAERIR +G     S    A+L  I + D     PN  +M+A+L    
Sbjct: 72  DQAVQIYAMTDLIAERIRKVGGTTLRSIGHIARLQRILDNDADYVEPN--DMLAELREDN 129

Query: 119 EAVTRTARSIFPTVDAAADEPTADLLTQRMQLHEKNAWML 158
           + +    R      D   D  T  L+   +   E+  W L
Sbjct: 130 KILCARLREAHGVCDEHHDIGTTSLIEVWIDETEQRTWFL 169


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 305,904
Number of extensions: 11243
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 89
Effective length of database: 753,222
Effective search space: 67036758
Effective search space used: 67036758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)