BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0413.p
         (210 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093546|ref|YP_001098621.1| putative thiamine-phosphate pyr...   239   7e-65

>gi|134093546|ref|YP_001098621.1| putative thiamine-phosphate
           pyrophosphorylase (TMP pyrophosphorylase) (TMP-PPase)
           (thiamine-phosphate synthase) (ThiE) [Herminiimonas
           arsenicoxydans]
          Length = 203

 Score =  239 bits (610), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 119/201 (59%), Positives = 150/201 (74%)

Query: 9   LRGLYIVTPDWDDTAQLLAATELALQNGAALVQYRHKTAAAPQRLAQASALLVLCRQYEV 68
           ++GLY+VTPDWDDT +LL  TELAL+ G  L+QYRHKTA A  R  QA  L  L + Y+ 
Sbjct: 1   MQGLYLVTPDWDDTRKLLEITELALKGGVTLLQYRHKTADAALRREQAECLQALAKSYQC 60

Query: 69  PLIINDHVDLCLEIGADGIHVGGTDASIAQVREAVGPERIVGASCYGTLELAHAAYRDGA 128
           P IIND++DLC+E+ ADGIHVGGTD ++A VR+A+GP++I+GASCYG+LE+AHAA   GA
Sbjct: 61  PFIINDYIDLCMELDADGIHVGGTDMAVADVRKAIGPQKILGASCYGSLEMAHAAEAAGA 120

Query: 129 SYVAFGGFYPSRVKKYDFRTEPEIIAQSKREIALPVVVIGGITLENAPPLVAQGADMVAV 188
           SYVAFGGFYPS+VKKY   T+P I+A  K +  +P  VIGG+T ENA PLV  GADMVA 
Sbjct: 121 SYVAFGGFYPSKVKKYPVTTDPMIVAHWKEQGKVPSCVIGGMTKENAAPLVRNGADMVAA 180

Query: 189 ISSVYLVPVEERKTRQLADLY 209
           ISS+YL    +   R   +L+
Sbjct: 181 ISSIYLAGDPQAAARAFVNLF 201


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 367,853
Number of extensions: 13895
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 132
Effective length of database: 743,337
Effective search space: 98120484
Effective search space used: 98120484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)