BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0412.p
         (286 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095443|ref|YP_001100518.1| phosphomethylpyrimidine kinase ...   159   2e-40
gi|134095912|ref|YP_001100987.1| hydroxymethylpyrimidine kinase ...   104   5e-24

>gi|134095443|ref|YP_001100518.1| phosphomethylpyrimidine kinase
           [Herminiimonas arsenicoxydans]
          Length = 263

 Score =  159 bits (402), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/267 (42%), Positives = 146/267 (54%), Gaps = 16/267 (5%)

Query: 12  PCVLVFSGSDPSGGAGMQADIPAITALGCHPLSVPTALTVQDNVSVFAVHALDPELVRHQ 71
           P VL  SG DPSGGAG+QADI AI A GCH     TALTVQ++V V     LDPE V  Q
Sbjct: 6   PIVLCLSGHDPSGGAGLQADIEAIMAQGCHAAPTVTALTVQNSVDVLDFRVLDPEWVFAQ 65

Query: 72  AQVLIDRFEIAAVKLGIAGSVENAQMIATLIRQLRQRNAQLPVVLDPVLANGKGDQLSRD 131
           A+ +     IAAVKLG+ GS+E    +A ++R L      +P+V DPVL  G G  L +D
Sbjct: 66  ARAVTSDLTIAAVKLGMLGSLEMVDTVAEILRGL----PNIPIVCDPVLRAGGGGALGKD 121

Query: 132 DAARII-EPLYALATVITPNLNEARRLCGEVDA-ARQAALLMQRGCAHVLLKGGHGAQEE 189
           +    + E L  LA+  TPNL EAR L    +  A Q A  +   C ++L+ GGHG  E+
Sbjct: 122 EVGYAMRERLLPLASFATPNLPEARILAELPEGTADQCAEKLLPYCQNLLITGGHG-DEQ 180

Query: 190 DVVNRWYGPAPAAAVPHPISASHSWRWTRLPDEFHGSGCTLAAALSACLARGLPMQQALD 249
           +V NR Y             +S ++   RLP  +HGSGCTLA+AL+  LA G     A++
Sbjct: 181 EVHNRLYSRD---------GSSKTFTCDRLPGSYHGSGCTLASALAGRLALGEDAATAVE 231

Query: 250 LAQRYTQHALSSAYAIAPGQRIPNRVP 276
            A  YT   L  A     GQ  P R+P
Sbjct: 232 AALAYTWRTLRDADHPGKGQHFPRRLP 258


>gi|134095912|ref|YP_001100987.1| hydroxymethylpyrimidine kinase
           [Herminiimonas arsenicoxydans]
          Length = 281

 Score =  104 bits (260), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 135/273 (49%), Gaps = 22/273 (8%)

Query: 10  TPPCVLVFSGSDPSGGAGMQADIPAITALGCHPLSVPTALTVQDNVSVFAVHALDPELVR 69
           T P +L F  +DP G  G+QAD+ +  A+GCH LSV TAL + D   +  +  +D + V 
Sbjct: 5   TSPLILTFGPTDPVGAVGIQADLASFAAMGCHGLSVVTALFIGDTARIEDMQIIDADWVS 64

Query: 70  HQAQVLIDRFEIAAVKLGIAGSVENAQMIATLIRQLRQRNAQLPVVLDPVLANGKGDQLS 129
            QA+V+++   +AA K+G  GSVEN   IA ++         +P++ DP L++       
Sbjct: 65  DQARVVLEDMPVAAFKVGAVGSVENVSAIAEIVSDY----PDIPLIFDPFLSSLPDQGAE 120

Query: 130 RDDAARIIEPL-------YALATVITPNLNEARRLCGEVD-AARQAALLMQRGCAHVLLK 181
            +D    I  L         L+ V    + E  R   E D  A  A  L++ GC +V + 
Sbjct: 121 GEDMLMAIRELLVPQTTVLVLSNVELARMAETWREPSEEDMMAVDAMRLIEMGCEYVFVT 180

Query: 182 GGHGAQEEDVVNRWYGPAPAAAVPHPISASHSWRWTRLPDEFHGSGCTLAAALSACLARG 241
           G   ++  DV N  +       + H         W R+   + G+G TLAA ++A LA G
Sbjct: 181 GTP-SELTDVANTLFD--EGGVIRHD-------NWQRISGSYSGAGATLAATIAALLANG 230

Query: 242 LPMQQALDLAQRYTQHALSSAYAIAPGQRIPNR 274
           L + +A+  AQ +T  ++++A  +  G+ +P+R
Sbjct: 231 LDIPEAVFEAQEFTVASIANAQRLGMGKLVPDR 263


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 555,879
Number of extensions: 22231
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 286
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 205
Effective length of database: 733,452
Effective search space: 150357660
Effective search space used: 150357660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)