BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0411.p
         (269 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093545|ref|YP_001098620.1| thiazole-phosphate synthase [He...   461   e-131
gi|134093617|ref|YP_001098692.1| thiamin biosynthesis enzyme sub...   458   e-130

>gi|134093545|ref|YP_001098620.1| thiazole-phosphate synthase
           [Herminiimonas arsenicoxydans]
          Length = 265

 Score =  461 bits (1187), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 220/260 (84%), Positives = 243/260 (93%)

Query: 9   TREDQGLTIAGKTYRSRLLVGSGKYKDLDETRAATVASGAEIITVAIRRVNIGQDPNAPS 68
           T  D    IAG TYRSRLLVGSGKYKDL +TR A++ASGA+I+TVAIRRVNIGQDPNAPS
Sbjct: 5   TFTDAPFVIAGTTYRSRLLVGSGKYKDLTQTREASLASGAQIVTVAIRRVNIGQDPNAPS 64

Query: 69  LLDAVPPSEFTILPNTAGCYNAADAVYTLQLARELLGGHKLVKLEVLGDEKTLFPNMPET 128
           LLD +PPSEFT+LPN+AGCYNAADAVYTLQL RE+LGGHKL KLEVLGDEKTLFPNMPET
Sbjct: 65  LLDVLPPSEFTLLPNSAGCYNAADAVYTLQLGREILGGHKLCKLEVLGDEKTLFPNMPET 124

Query: 129 LKAADILVKDGFDVMVYCSDDPIQARMLEDLGVAAVMPLASLIGSGMGILNPWNLSLIID 188
           LKAA+ LVKDGFDVMVYCSDDPIQARMLED+G AA+MPLASLIGSGMGILNPWNLSLII+
Sbjct: 125 LKAAETLVKDGFDVMVYCSDDPIQARMLEDIGCAAIMPLASLIGSGMGILNPWNLSLIIE 184

Query: 189 QARVPVLVDAGVGTASDAAIAMELGCDGVLMNTAIAGARDPIRMARAMKLAVDAGREAFL 248
           Q++VPV+VDAGVGTASDAAIAMELGCDGVLMNTAIAGA+DP+RMA AMKL +DAGR A+L
Sbjct: 185 QSKVPVIVDAGVGTASDAAIAMELGCDGVLMNTAIAGAQDPVRMAHAMKLGIDAGRNAYL 244

Query: 249 AGRIARKFAASPSSPMAGRV 268
           AGRIA++F+ASPSSPMAGRV
Sbjct: 245 AGRIAKRFSASPSSPMAGRV 264


>gi|134093617|ref|YP_001098692.1| thiamin biosynthesis enzyme
           subunit ThiG, with ThiH [Herminiimonas arsenicoxydans]
          Length = 265

 Score =  458 bits (1179), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/260 (84%), Positives = 243/260 (93%)

Query: 9   TREDQGLTIAGKTYRSRLLVGSGKYKDLDETRAATVASGAEIITVAIRRVNIGQDPNAPS 68
           T  D    IAG TYRSRLLVGSGKYKDL +TR A++ASGA+I+TVAIRRVNIGQDPNAPS
Sbjct: 5   TFPDAPFVIAGTTYRSRLLVGSGKYKDLTQTREASLASGAQIVTVAIRRVNIGQDPNAPS 64

Query: 69  LLDAVPPSEFTILPNTAGCYNAADAVYTLQLARELLGGHKLVKLEVLGDEKTLFPNMPET 128
           LLD +PPSEFT+LPN+AGCYNAADAVYTLQL RE+LGGHKL KLEVLGDEKTLFPNMPET
Sbjct: 65  LLDVLPPSEFTLLPNSAGCYNAADAVYTLQLGREILGGHKLCKLEVLGDEKTLFPNMPET 124

Query: 129 LKAADILVKDGFDVMVYCSDDPIQARMLEDLGVAAVMPLASLIGSGMGILNPWNLSLIID 188
           LKAA+ LVKDGFDVMVYCSDDPIQARMLED+G AA+MPLASLIGSGMGILNPWNLSLII+
Sbjct: 125 LKAAETLVKDGFDVMVYCSDDPIQARMLEDIGCAAIMPLASLIGSGMGILNPWNLSLIIE 184

Query: 189 QARVPVLVDAGVGTASDAAIAMELGCDGVLMNTAIAGARDPIRMARAMKLAVDAGREAFL 248
           Q++VPV+VDAGVGTASDAAIAMELGCDGVLMNTAIAGA+DP+RMA AMKL +DAGR A+L
Sbjct: 185 QSKVPVIVDAGVGTASDAAIAMELGCDGVLMNTAIAGAQDPVRMAHAMKLGIDAGRNAYL 244

Query: 249 AGRIARKFAASPSSPMAGRV 268
           AGRIA++F+A+PSSPMAGRV
Sbjct: 245 AGRIAKRFSAAPSSPMAGRV 264


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 513,047
Number of extensions: 21737
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 189
Effective length of database: 736,747
Effective search space: 139245183
Effective search space used: 139245183
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)