BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0407.p (939 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093543|ref|YP_001098618.1| valyl-tRNA synthetase [Herminii... 1575 0.0 gi|134094085|ref|YP_001099160.1| isoleucyl-tRNA synthetase [Herm... 194 1e-50 gi|134095829|ref|YP_001100904.1| leucyl-tRNA synthetase [Hermini... 79 1e-15 >gi|134093543|ref|YP_001098618.1| valyl-tRNA synthetase [Herminiimonas arsenicoxydans] Length = 969 Score = 1575 bits (4078), Expect = 0.0, Method: Compositional matrix adjust. Identities = 754/974 (77%), Positives = 828/974 (85%), Gaps = 41/974 (4%) Query: 1 MELAKSFEPAEIEKFWREEWEKRGYFAATTDAEKPSFSIQLPPPNVTGTLHMGHAFNQTI 60 MELAKSF+PA+IE FWR EWEKRGY+ ATTDA+KPSFSIQLPPPNVTGTLH+GH FNQTI Sbjct: 1 MELAKSFDPADIEAFWRTEWEKRGYYTATTDADKPSFSIQLPPPNVTGTLHLGHGFNQTI 60 Query: 61 MDGLTRYHRMRGYNTAWIPGTDHAGIATQIVVERQLDAQKVSRHDLGREKFVEKVWEWKE 120 MDGLTRYHRMRG+NTAWIPGTDHAGIATQIVVERQLDAQK++RHDLGREKF+EKVWEWKE Sbjct: 61 MDGLTRYHRMRGFNTAWIPGTDHAGIATQIVVERQLDAQKITRHDLGREKFIEKVWEWKE 120 Query: 121 KSGSTITGQMRRMGASTDWAREYFTMDTKMSKAVTEVFVRLYEQGLIYRGKRLVNWDPVL 180 KSGSTITGQMRR+G S DW+REYFTMD SK VTEVFVRL EQGLIYRGKRLVNWDPVL Sbjct: 121 KSGSTITGQMRRLGTSPDWSREYFTMDEPRSKVVTEVFVRLVEQGLIYRGKRLVNWDPVL 180 Query: 181 GTAVSDLEVVSEEEDGSMWHIKYPLADGSGH--------------------IVVATTRPE 220 GTAVSDLEVVSEEEDG MW+I+YPLADGS + IVVATTRPE Sbjct: 181 GTAVSDLEVVSEEEDGHMWNIRYPLADGSTYKFPIAYDEAGNATEWEERNFIVVATTRPE 240 Query: 221 TMLGDVAVAVDPTDERYAALVGKMIKLPLVGREIPIIQDEYVDKEFGTGCVKITPAHDFN 280 TMLGDVAVAVDP DERY LVGK++ LPL R IPII D+YVDKEFGTGCVKITPAHDFN Sbjct: 241 TMLGDVAVAVDPDDERYTHLVGKLLTLPLCDRAIPIIADDYVDKEFGTGCVKITPAHDFN 300 Query: 281 DYQVGARHNLEMISVFTLKATINENAPEKYQGLDRFEARKQIVADLDALGLLEQVKPHKL 340 DY VG RHNL+ IS+ TL A INE+AP YQG+DR+ ARKQIVADLDA GLLE VKPHKL Sbjct: 301 DYAVGQRHNLDKISILTLDAKINEHAPAAYQGMDRYAARKQIVADLDAQGLLELVKPHKL 360 Query: 341 MVPRGDRTGVVIEPMLTDQWFVAMSKPAPEGTFFPGKSIAETALEKVSSGEIKFVPENWT 400 MVPRGDRT VIEPMLTDQWFVAMSKPAPEGT FPGKSI E ALEKV+SGE+K +PENW Sbjct: 361 MVPRGDRTNAVIEPMLTDQWFVAMSKPAPEGTHFPGKSITEVALEKVASGEVKLLPENWA 420 Query: 401 NTYNQWLNNIQDWCISRQLWWGHQIPAWYDEDGGIYVARTEEEAKKQAGGKA----VKRD 456 NTYNQWLNNIQDWCISRQLWWGHQIPAWYD +G +YVAR EEEA+ +A + + RD Sbjct: 421 NTYNQWLNNIQDWCISRQLWWGHQIPAWYDSEGKVYVARNEEEARTKAAAQGYHGPLTRD 480 Query: 457 EDVLDTWFSSALVPFSTLGWPEETPDYKLFLPSSVLVTGFDIIFFWVARMVMMTTHFTGK 516 EDVLDTWFSSALVPFSTLGWPEETPD+K FLPSSVLVTGFDIIFFWVARMVMMTTHFTGK Sbjct: 481 EDVLDTWFSSALVPFSTLGWPEETPDFKNFLPSSVLVTGFDIIFFWVARMVMMTTHFTGK 540 Query: 517 VPFDTVYVHGLVRDASGQKMSKSKGNTLDPIDLIDGIGVDELVAKRTVGLMNPKQAASIE 576 VPF+TVYVHGL+RD+SGQKMSKSKGNTLDPIDLIDGI V++LVAKRTVGLMNPKQAASIE Sbjct: 541 VPFNTVYVHGLIRDSSGQKMSKSKGNTLDPIDLIDGISVEDLVAKRTVGLMNPKQAASIE 600 Query: 577 KATRKEFADGIPAFGTDALRFTFASLATLGRNINFDLNRCEGYRNFCNKLWNATRFVLMN 636 KATRKE+ +GI A+GTDALRFT AS A+LGRNINFDL+RCEGYRNFCNKLWNATRFVLMN Sbjct: 601 KATRKEYPNGIAAYGTDALRFTMASYASLGRNINFDLHRCEGYRNFCNKLWNATRFVLMN 660 Query: 637 TEGQDCGF------------DGHVKGVCDKEKLQFSKADRWIVSLLQRTEAEVEKGFADY 684 EGQDCGF DG G D FS+ADRWIVS LQRTE ++ KGFADY Sbjct: 661 CEGQDCGFRDAPCAAGDCAVDGKAGGYTD-----FSQADRWIVSKLQRTETDIAKGFADY 715 Query: 685 RFDNIATAIYKFVWDEYCDWYLEMAKAQIQNGNEAQQRATRRTLLRVLESVLRLAHPVLP 744 RFDNIA+++Y+F+WDEYCDWYLE+AK QIQ G EAQQRATRRTLLRVLE++LRLAHPV+P Sbjct: 716 RFDNIASSLYQFIWDEYCDWYLEVAKVQIQTGTEAQQRATRRTLLRVLETILRLAHPVIP 775 Query: 745 FITEQLWQSVAPLTDRKPDPAGDSIMRQAYPRPDLEKVDAEAEAWVAQFKAYTDACRNLR 804 FITEQLWQ+VAPL K PAGDSIM Q YP K+D +AE+W+A+ K+ TDACRNLR Sbjct: 776 FITEQLWQTVAPLAGHKMHPAGDSIMMQPYPEAQPGKLDEQAESWMAELKSMTDACRNLR 835 Query: 805 GEMQLAPSLRVPLIVEATNAADAAAVESFLPYLQGLVRLSETTVVAQLPESPAPVAIVGE 864 GEMQL+P+LRVPLI+EA + AA ++SF PYLQ L +LSE V QLPESPAPV+IVG Sbjct: 836 GEMQLSPALRVPLIMEAGDTEQAARLQSFAPYLQALAKLSEVNVADQLPESPAPVSIVGA 895 Query: 865 VKLMLKVEIDVAAERERLGKEVTRLTAEIAKANGKLSNESFVARAPEAVVAQEKERVANF 924 KLMLKVEIDVAAERERL KE+ RL EI KAN KL NE+FVARAP VVAQE+ERVANF Sbjct: 896 AKLMLKVEIDVAAERERLSKEIARLDGEITKANSKLGNENFVARAPAQVVAQEEERVANF 955 Query: 925 SATLEKVKEQLAKL 938 SATLEK++EQ KL Sbjct: 956 SATLEKLREQFIKL 969 >gi|134094085|ref|YP_001099160.1| isoleucyl-tRNA synthetase [Herminiimonas arsenicoxydans] Length = 959 Score = 194 bits (494), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 225/935 (24%), Positives = 368/935 (39%), Gaps = 167/935 (17%) Query: 10 AEIEKFWREEWEKRGYFAATTDAEK--PSFSIQLPPPNVTGTLHMGHAFNQTIMDGLTRY 67 A+ E W ++W+ + + +A K P F + PP G +H+GHA N+ + D + + Sbjct: 38 AKREPQWVKQWQDKKIYEKIREASKGRPKFILHDGPPYANGDIHIGHAVNKILKDMIVKT 97 Query: 68 HRMRGYNTAWIPGTDHAGIATQIVVERQLDAQKVSRHDLGREKFVEKVWEWKEKSGSTIT 127 + GY+ ++PG D G+ +I +E K+ L + +EK + + Sbjct: 98 RQFDGYDAPYVPGWDCHGMPIEIQIE------KLYGKSLPTAEVLEKSRAYATEQIERQK 151 Query: 128 GQMRRMGASTDWAREYFTMDTKMSKAVTEVFVRLYEQGLIYRGKRLVNWDPVLGTAVSDL 187 R+G +W Y TMD L E+G +YRG + VNW G+A+++ Sbjct: 152 KDFIRLGVLGEWDNPYKTMDFGNEADEIRALGTLLEKGYVYRGLKPVNWCFDCGSALAEA 211 Query: 188 EVVSEEEDGSMWHIKYPLAD---------------GSGHIVVATTRPETMLGDVAVAVDP 232 EV +++ + +P A+ G+ V+ TT P T+ + A+ V P Sbjct: 212 EVEYQDKRDPAIDVGFPFAEPEKVAKAFGLAKLPTNKGYAVIWTTTPWTIPANQALNVHP 271 Query: 233 ---------------------------TDERY-------AALVGK---MIKL-------- 247 T +RY A VG+ MIK Sbjct: 272 EFTYALVQTERKGETVLLILAADLVEATLQRYGLEGKTIATCVGEALAMIKFKHPFADVD 331 Query: 248 PLVGREIPIIQDEYVDKEFGTGCVKITPAHDFNDYQVGARHNL---EMISVFTLKATINE 304 P R PI YV + GTG V PA+ D+ H L E+++ Sbjct: 332 PGYNRLSPIYPGTYVTADSGTGIVHSAPAYGIEDFISCKSHGLKDDEIVAPVMADGKYAS 391 Query: 305 NAPEKYQGLDRFEARKQIVADLDALGLLEQVK--PHKLMVPRGDRTGVVIEPMLTDQWFV 362 P + GL +EA K I A LD +G L ++ H M +T ++ T QWF Sbjct: 392 WLP-LFGGLTIWEASKPICAKLDEVGSLFKLVMFDHSYMHCWRHKTPIIYRA--TSQWFA 448 Query: 363 AMS-KPAPEGTFFPGKSIAETALEKVSSGEIKFVPENWTNTYNQWLNNIQDWCISRQLWW 421 M P +GT ++ ETAL + E F P + + N DW +SRQ W Sbjct: 449 GMDVMPKNQGT-----TLRETALAAIEQTE--FFPGWGKARLHGMIANRPDWTLSRQRQW 501 Query: 422 GHQIPAWYDEDGGIYVARTEE--------------------EAKKQAGGKA--VKRDEDV 459 G + + ++ G RT E + K+ G A +++D Sbjct: 502 GVPMAFFVHKESGDLHPRTPELLEQIAQRVEKNGIEAWLKLDPKELLGDDADMYLKNKDT 561 Query: 460 LDTWFSSALVPFSTLGWPEETPDYKLFLPSSVLVTGFDIIFFWVARMVMMTTHFTGKVPF 519 LD WF S + L + +L P+ + + G D W ++ ++ G P+ Sbjct: 562 LDVWFDSGTTHQTVL---RGSHKEQLAFPADLYLEGSDQHRGWFHSSLLTSSMLNGHAPY 618 Query: 520 DTVYVHGLVRDASGQKMSKSKGNTLDPIDLIDGIGVDELVAKRTVGLMNPKQAASIEKAT 579 + HG V D G+KMSKSKGN + P + D +G D + + V + SI Sbjct: 619 KALLTHGFVVDGEGKKMSKSKGNVVAPQKVSDSLGAD--ILRLWVAATDYSGELSISDEI 676 Query: 580 RKEFADGIPAFGTDALRFTFASLATLGRNINFDLNRCEGYRNFCNKLWNATRFVLMNTEG 639 K R T E YR N L RF+L NT Sbjct: 677 LK--------------RVT------------------ESYRRIRNTL----RFLLSNTSD 700 Query: 640 QDCGFDGHVKGVCDKEKLQFSKADRWIVSLLQRTEAEVEKGFADYRFDNIATAIYKFVWD 699 D G D + V D ++ DR+ ++ + + E+ + Y F + + + + + Sbjct: 701 FDAGKD--LVAVADMLEI-----DRYAIAQMNAMQNEIVAHYRAYEFHPVISKLQGYCTE 753 Query: 700 EYCDWYLEMAKAQIQNGN--EAQQRATRRTLLRVLESVLRLAHPVLPFITEQLWQSVAPL 757 + +YL++ K ++ +R+ + + + +S+LRL PVL F E+ W A Sbjct: 754 DLGGFYLDILKDRLYTSGVTSHARRSAQSAIWHLTQSLLRLMAPVLSFTAEEAWVIFA-- 811 Query: 758 TDRKPDPAGDSIMRQA-YPRPDLEKVDAEAEAWVAQFKAYTDACRNLRGEMQLAPSLRVP 816 AGD+I Q Y P++ DA + + D + L E+++A + Sbjct: 812 ----GKDAGDTIFTQTYYALPEVADGDALLGKYTLLREVRNDVTKQLE-EVRVAGGIGSS 866 Query: 817 LIVEATNAADA---AAVESFLPYLQGLVRLSETTV 848 L E A AA+ES L+ ++ S+ +V Sbjct: 867 LQAEVALQASGDKFAALESLDDDLKFVLITSQASV 901 >gi|134095829|ref|YP_001100904.1| leucyl-tRNA synthetase [Herminiimonas arsenicoxydans] Length = 881 Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 89/205 (43%), Gaps = 30/205 (14%) Query: 3 LAKSFEPAEIEKFWREEWEKRGYFAATTDAEKPSFSI--------QLPPPNVTGTLHMGH 54 + + PA++EK + W+ + A A+ + LP P +G LHMGH Sbjct: 1 MQDKYSPADVEKSAHDHWQATDAYKAVEHAKDKNGKDKKKFYACSMLPYP--SGKLHMGH 58 Query: 55 AFNQTIMDGLTRYHRMRGYNTAWIPGTDHAGIATQIVVERQLDAQKVSRHDLGREKFVEK 114 N TI D + RY RM GYN G D G+ E A V Sbjct: 59 VRNYTINDVMYRYLRMNGYNVLMPMGWDAFGMPA----ENAAMANNVPPA---------- 104 Query: 115 VWEWKEKSGSTITGQMRRMGASTDWAREYFTMDTKMSKAVTEVFVRLYEQGLIYRGKRLV 174 +W + + QM MG + DW+RE + K +F+++ E+G+IY+ V Sbjct: 105 --QWTYANIEHMKTQMASMGLAIDWSREMTACKPEYYKWNQWMFLKMLEKGIIYKKTGSV 162 Query: 175 NWDPVLGTAVSDLEVVSEEEDGSMW 199 NWDP+ T +++ +V+ DG W Sbjct: 163 NWDPIDQTVLANEQVI----DGRGW 183 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.134 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,768,107 Number of extensions: 72905 Number of successful extensions: 196 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 5 Length of query: 939 Length of database: 1,000,347 Length adjustment: 91 Effective length of query: 848 Effective length of database: 700,502 Effective search space: 594025696 Effective search space used: 594025696 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)