BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0402.p
         (192 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093539|ref|YP_001098614.1| Holliday junction DNA helicase ...   253   6e-69

>gi|134093539|ref|YP_001098614.1| Holliday junction DNA helicase
           ruvA [Herminiimonas arsenicoxydans]
          Length = 161

 Score =  253 bits (645), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 135/161 (83%), Positives = 149/161 (92%)

Query: 32  MSTYYNLPALGEKVTLLTHLAIREDAHILFGFGTAEERNTFKELIKISGVGARTALSILS 91
           MST+YNLP LGEKV LLTHL +REDAHILFGFGTAEERN FK+L+KI+G+GARTALSILS
Sbjct: 1   MSTFYNLPGLGEKVALLTHLTVREDAHILFGFGTAEERNVFKQLVKITGIGARTALSILS 60

Query: 92  GMSVSDLAQAVSLQEAGRLTRVPGIGKKTAERLLLELKGKLGADLGVAPGVVHSDATADI 151
           GMSV+DL+ A++LQEAGRLT++PGIGKKTAERLLLELKGKLGADLG A GV+HSDAT+DI
Sbjct: 61  GMSVADLSNAITLQEAGRLTKIPGIGKKTAERLLLELKGKLGADLGAAGGVIHSDATSDI 120

Query: 152 LNALLALGYSDKEASLAMKQVPKEASVSDGIKLALKALSKA 192
           LNALLALGYSDKEA LAMKQVP    VSDGIKLALKALSKA
Sbjct: 121 LNALLALGYSDKEALLAMKQVPAGTGVSDGIKLALKALSKA 161


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 308,871
Number of extensions: 10829
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 115
Effective length of database: 746,632
Effective search space: 85862680
Effective search space used: 85862680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)