BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0400.p
         (180 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093538|ref|YP_001098613.1| Holliday junction resolvase [He...   302   5e-84

>gi|134093538|ref|YP_001098613.1| Holliday junction resolvase
           [Herminiimonas arsenicoxydans]
          Length = 180

 Score =  302 bits (774), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 152/180 (84%), Positives = 159/180 (88%)

Query: 1   MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKSPDGDLPSRLKVILSSVGEVVRTYAP 60
           MKILGIDPGLRTTGFGVI KQGN LSYIASGTIK+PD DLP RLK IL SV EV+ TY P
Sbjct: 1   MKILGIDPGLRTTGFGVIEKQGNKLSYIASGTIKTPDADLPQRLKTILVSVAEVIATYKP 60

Query: 61  DCAAIEKVFVNVNPQSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120
           DCAAIEKVFVNVNPQSTLLLGQARGAAICALV ADL VAEYTALQVKQAV G G+AQKAQ
Sbjct: 61  DCAAIEKVFVNVNPQSTLLLGQARGAAICALVGADLFVAEYTALQVKQAVVGQGKAQKAQ 120

Query: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGTLAPALARKGIRMRGGRLVG 180
           VQ+MV RLLKL GLPGTDAADALGVAICHAH G  LS LG LAP LA+KG+R+RGGRLVG
Sbjct: 121 VQDMVQRLLKLSGLPGTDAADALGVAICHAHSGEALSMLGALAPELAKKGLRVRGGRLVG 180


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 330,282
Number of extensions: 12377
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 104
Effective length of database: 749,927
Effective search space: 77992408
Effective search space used: 77992408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)