BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0392.p
         (545 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093537|ref|YP_001098612.1| bifunctional phosphoribosylamin...   939   0.0  

>gi|134093537|ref|YP_001098612.1| bifunctional
           phosphoribosylaminoimidazolecarboxamide
           formyltransferase/IMP cyclohydrolase [Herminiimonas
           arsenicoxydans]
          Length = 521

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/524 (86%), Positives = 484/524 (92%), Gaps = 4/524 (0%)

Query: 23  MIKQALISVSDKAGVLDFARALSAMGVNILSTGGTAKLLADNGVPVTEVADYTGFPEMLD 82
           MIKQALISVSDK GVLDFARALSAMGVNILSTGGTAKLLA+NG+ VTEVADYTGFPEMLD
Sbjct: 1   MIKQALISVSDKTGVLDFARALSAMGVNILSTGGTAKLLAENGISVTEVADYTGFPEMLD 60

Query: 83  GRVKTLHPKVHGGILARRDFPEHVAALEQHGIPTIDMVVVNLYPFQQTVAKDECSLEDAI 142
           GRVKTLHPKVHGGILARRDFPEHVAAL +H IPTIDMVVVNLYPFQQTVA+ ECSLEDAI
Sbjct: 61  GRVKTLHPKVHGGILARRDFPEHVAALSKHDIPTIDMVVVNLYPFQQTVARAECSLEDAI 120

Query: 143 ENIDIGGPAMLRSSAKNHKDVIVICDPTDYDGVLAELKSG-GDLPYEKRFALAKKVFAHT 201
           ENIDIGGPAMLRSSAKNHKDVIVICDP+DY  VL EL +  G+  YE +FALAKKVFAHT
Sbjct: 121 ENIDIGGPAMLRSSAKNHKDVIVICDPSDYSLVLHELNTNNGEATYETKFALAKKVFAHT 180

Query: 202 AQYDGAITNYFTSLGEDKQHSTRSAYPATLNLHFEKVQDMRYGENPHQSAAFYRDIKKVD 261
           AQYDGAITNYFTSLG DKQH+TRS+YPATLNLHFEKVQ+MRYGENPHQSAAFYR+     
Sbjct: 181 AQYDGAITNYFTSLGADKQHATRSSYPATLNLHFEKVQEMRYGENPHQSAAFYRESNPQA 240

Query: 262 GALANYTQLQGKELSFNNIADADAAWECVKSFDPALEAACVIIKHANPCGVAIGANPLEA 321
           GALANY QLQGKELS+NNIADADAAWECVK+FD   EAACVIIKHANPCGVA+G  P EA
Sbjct: 241 GALANYAQLQGKELSYNNIADADAAWECVKTFD---EAACVIIKHANPCGVAVGITPFEA 297

Query: 322 YSKALQTDPTSAFGGIIAFNREVDAAAAEAVAKQFLEVLIAPSFSAEAKQIFAAKQNVRL 381
           YSKALQTDPTSAFGGIIAFNREVD  AAEAVAKQF+EVLIAPSF+ +AK+IFAAKQNVRL
Sbjct: 298 YSKALQTDPTSAFGGIIAFNREVDGNAAEAVAKQFVEVLIAPSFTEQAKKIFAAKQNVRL 357

Query: 382 LEIPLGKGLNGYDFKRVGGGLLVQSPDAKNVLLADVKVVSKKQPTQQQLQDLMFAWRVAK 441
           LEIPLG  +N +DFKRVGGGLLVQSPDAKNV LA++KVVSKKQPT QQLQDLMFAWRVAK
Sbjct: 358 LEIPLGDAVNSHDFKRVGGGLLVQSPDAKNVTLAELKVVSKKQPTPQQLQDLMFAWRVAK 417

Query: 442 FVKSNAIVFCGNGMTLGVGAGQMSRIDSARIASIKAQNAGLTLAGSAVASDAFFPFRDGL 501
           FVKSNAIVFC NGMT+GVGAGQMSRIDSARIA+IKAQNAGL+L G+AVASDAFFPFRDGL
Sbjct: 418 FVKSNAIVFCANGMTMGVGAGQMSRIDSARIAAIKAQNAGLSLVGTAVASDAFFPFRDGL 477

Query: 502 DVVVDAGATCVIHPGGSMRDQEVVDAANERDVVMLLTGTRHFRH 545
           DVVV+AGAT VIHPGGSMRDQEV+DAA+E  +VMLLTGTRHFRH
Sbjct: 478 DVVVEAGATSVIHPGGSMRDQEVIDAADEHGIVMLLTGTRHFRH 521


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,013,983
Number of extensions: 41970
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 459
Effective length of database: 716,977
Effective search space: 329092443
Effective search space used: 329092443
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)