BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0387.p
         (214 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093534|ref|YP_001098609.1| putative phosphoglycerate/bisph...   243   8e-66
gi|134096131|ref|YP_001101206.1| phosphoglyceromutase 1 [Hermini...    65   3e-12

>gi|134093534|ref|YP_001098609.1| putative
           phosphoglycerate/bisphosphoglycerate mutase
           [Herminiimonas arsenicoxydans]
          Length = 216

 Score =  243 bits (619), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 121/213 (56%), Positives = 145/213 (68%)

Query: 1   MTDILLIRHGETDWNVDKRLQGHIDIGLNQAGQRQVLALGEALAGEGIDAIFASDLQRAR 60
           MT+ILLIRHGETDWNV+KRLQGH DI LN+ G RQV ALG AL  E +DAIF+SDL+RA 
Sbjct: 1   MTEILLIRHGETDWNVEKRLQGHHDIDLNREGVRQVAALGRALLDEPLDAIFSSDLKRAL 60

Query: 61  DTAQAVADAAGLEVLIDAGLRERCYGAFEGLRHIEIEARYPDAYRQWKARDPDYRYPAGE 120
            TAQ +A   G+ V +  GLRERC+GA EGL H EI ARYPD Y  WK RD D  YP GE
Sbjct: 61  GTAQGIAIPRGMSVQLHKGLRERCFGALEGLLHPEIHARYPDEYAAWKRRDIDANYPPGE 120

Query: 121 RIAETMREFYERSVQAVQRALASGRYRKVAIVTHGGVLECVHHWASQTSFSQPRSFDIFN 180
             AET+REF  R++ A+     +   RK+AIVTHGGVL+ V+  A    +  PR FD+ N
Sbjct: 121 FQAETLREFSARAIAAITGLANTPGCRKIAIVTHGGVLDSVYRHARNMGYEHPRDFDVLN 180

Query: 181 ASVNRLHWDGQRAHIRSWGEIGHLQRETLDEVD 213
           AS+NR+ WDG    I  W ++ HL   TLDE D
Sbjct: 181 ASINRVSWDGAHFQILKWADVAHLAHATLDESD 213


>gi|134096131|ref|YP_001101206.1| phosphoglyceromutase 1
           [Herminiimonas arsenicoxydans]
          Length = 248

 Score = 65.1 bits (157), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 32/191 (16%)

Query: 1   MTDILLIRHGETDWNVDKRLQGHIDIGLNQAGQRQVLALGEAL--AGEGIDAIFASDLQR 58
           M  I+L+RHGE+ WN+D R  G  D+ L + G  +    G+ L  AG   D  ++S L+R
Sbjct: 1   MYKIVLMRHGESTWNLDNRFTGWADVDLTEKGCAEAKHAGKLLRDAGFTFDLAYSSVLKR 60

Query: 59  ARDTAQAVADAAGL---EVLIDAGLRERCYGAFEGLRHIEIEARY-PDAYRQWK------ 108
           A  T     D   L    V+ D  L ER YGA +G+   E  ++Y  D   QW+      
Sbjct: 61  AIRTMWITLDEMDLMWIPVVCDWHLNERHYGALQGMNKAETASKYGADQVLQWRRSYDTP 120

Query: 109 ------------ARDPDY------RYPAGERIAETMREFYERSVQAVQRALASGRYRKVA 150
                        +DP Y        P GE + +T+          +  ++ +G  R++ 
Sbjct: 121 PKLLAEDDPRTMYKDPRYATLKREEIPLGECLKDTLLRVEPYWNDTIVPSIRAG--RQII 178

Query: 151 IVTHGGVLECV 161
           I  HG  L  +
Sbjct: 179 ISAHGNSLRAL 189


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 404,457
Number of extensions: 15579
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 3
Length of query: 214
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 136
Effective length of database: 743,337
Effective search space: 101093832
Effective search space used: 101093832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)