BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0386.p
         (215 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093533|ref|YP_001098608.1| toluene-induced BbsI protein [H...   305   1e-84

>gi|134093533|ref|YP_001098608.1| toluene-induced BbsI protein
           [Herminiimonas arsenicoxydans]
          Length = 221

 Score =  305 bits (780), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 144/219 (65%), Positives = 168/219 (76%), Gaps = 4/219 (1%)

Query: 1   MKFWSDSFKDGGNIPGEFAFAVMDPKTHVALSANRNPHFAWSELPAGTKSLALVVHDPDV 60
           MK WSD+FKDG  IPG  AF V+DP THVALSAN+NPH AWS++PAGTKSLAL+VHDPDV
Sbjct: 2   MKLWSDTFKDGAAIPGACAFCVIDPVTHVALSANQNPHLAWSDVPAGTKSLALIVHDPDV 61

Query: 61  PSRGDDVNQEGKTVPLELPRVDFYHWTLVDIPASVSQIKAGQFSNGVSARGKPGPAVLGD 120
           PSRGDDVNQEGKTVP +LPRVDF+HW LVD+P   + I A  FS+GV+ RGK GPA+   
Sbjct: 62  PSRGDDVNQEGKTVPADLPRVDFFHWVLVDVPPDTTHIDAASFSDGVTPRGKSGPAISAS 121

Query: 121 VMPGA----RQGINDYTGWFAGDGDMRGDYFGYDGPCPPWNDALVHRYIFTLYALDVEQL 176
            + GA    RQG+NDYTGWFA D  M GDYFGYDGPCPPWNDA+VHRY+FTLYALD+ +L
Sbjct: 122 PIDGAQINPRQGLNDYTGWFAQDAQMAGDYFGYDGPCPPWNDAIVHRYVFTLYALDIARL 181

Query: 177 PVAGNLEGSVVLTALRDHVLEQASITGLYTLNPNAVPRS 215
           P+ G   G+    A+  HVL QAS+ G Y LNP   P +
Sbjct: 182 PLNGKFGGAQARDAVAGHVLAQASLCGWYGLNPAVSPTT 220


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 487,871
Number of extensions: 21945
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 137
Effective length of database: 743,337
Effective search space: 101837169
Effective search space used: 101837169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)