BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0384.p
         (422 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093531|ref|YP_001098606.1| tyrosyl-tRNA synthetase [Hermin...   744   0.0  

>gi|134093531|ref|YP_001098606.1| tyrosyl-tRNA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 413

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/409 (85%), Positives = 385/409 (94%)

Query: 14  TSAAPSRLPLTDKVQEALAITKRGIDELLIESEFAQKLARAEQSGQPLRIKLGLDPTAPD 73
           +S+  + LPL+D VQEAL + KRG++ELLIESEFAQKLAR+EQSG+PLRIKLGLDPTAPD
Sbjct: 5   SSSKATLLPLSDAVQEALTVAKRGVEELLIESEFAQKLARSEQSGKPLRIKLGLDPTAPD 64

Query: 74  LHLGHTVVLNKMRQLQNLGHQVIFLIGDFTSMIGDPSGRNATRPPLSREQIEINAKTYFA 133
           LHLGHTVVLNKMRQLQ+LGHQVIFLIGDFTSMIGDPSGRN TRPPL++EQI  NAKTYF+
Sbjct: 65  LHLGHTVVLNKMRQLQDLGHQVIFLIGDFTSMIGDPSGRNITRPPLTKEQISENAKTYFS 124

Query: 134 QASLVLDPSKTEIRYNSEWCDALGSRGMIQLASRYTVARMMERDDFTKRFKEGTPISVHE 193
           QASLVLDP++TEIRYNSEWCD LG+RGMI+L+++YTVAR++ER+DFTKRF+  TPIS+HE
Sbjct: 125 QASLVLDPARTEIRYNSEWCDPLGARGMIELSAKYTVARILEREDFTKRFQSNTPISLHE 184

Query: 194 FLYPLMQGYDSVALKSDLELGGTDQKFNLLVGRELQKDFGQEPQCILTMPLLEGLDGVEK 253
           FLYPLMQGYDSVALKSDLELGGTDQKFNLLVGRELQK +GQE QCILTMPLLEGLDGVEK
Sbjct: 185 FLYPLMQGYDSVALKSDLELGGTDQKFNLLVGRELQKSYGQEQQCILTMPLLEGLDGVEK 244

Query: 254 MSKSKGNYIGITEPANTMFAKVMSISDVMMWRYYELLSFRSIAEIAGFKAEVEAGRNPRD 313
           MSKSKGNYIGITEP NTMFAK+MSISDVMMWRYYELLSFRS+AEI  F+ +VE GRNPRD
Sbjct: 245 MSKSKGNYIGITEPGNTMFAKLMSISDVMMWRYYELLSFRSLAEITQFRKDVEGGRNPRD 304

Query: 314 IKVALAQEIVARFHSQQAAEDALADFVNRSKGGIPDDIPEVSLSGAPLGIGQLLKQANLC 373
           +KV LAQEIVARFHS QAAEDALADFVNRSKGGIPDDIPE++LSGAPLGIGQLLKQANLC
Sbjct: 305 VKVLLAQEIVARFHSVQAAEDALADFVNRSKGGIPDDIPELALSGAPLGIGQLLKQANLC 364

Query: 374 ASTSEALRMVEQGGVRIDGAVISDKGLKVEAGQCVVQVGKRKFARVTLA 422
           ASTSEALRMVEQGGVRIDGAVISDK LKVEAG  VVQVGKRKFARVTL+
Sbjct: 365 ASTSEALRMVEQGGVRIDGAVISDKALKVEAGTVVVQVGKRKFARVTLS 413


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 729,113
Number of extensions: 29536
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 338
Effective length of database: 723,567
Effective search space: 244565646
Effective search space used: 244565646
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)