BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0383.p
         (515 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093530|ref|YP_001098605.1| putative endopeptidase [Hermini...   599   e-173
gi|134095961|ref|YP_001101036.1| putative metalloendopeptidase [...    91   1e-19

>gi|134093530|ref|YP_001098605.1| putative endopeptidase
           [Herminiimonas arsenicoxydans]
          Length = 456

 Score =  599 bits (1545), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 297/464 (64%), Positives = 352/464 (75%), Gaps = 10/464 (2%)

Query: 51  MFPQDKLKHLTSRCCSALQSCHHKVAASSPKTRIIGASALFLAAFTIGAAGFAPAEPDLR 110
           MF  +K    +SR  S L         SS KTR+I  SAL LA    GAAG AP  PD  
Sbjct: 1   MFTLNKFLSASSRYKSLL-------LGSSRKTRVISGSALVLAVCAFGAAGVAPMAPDAD 53

Query: 111 DAPVNPISKELALPDLQQQISALEERSQYYVNEERVRSGDTLASLLNRLGVDDDEATAFI 170
           + P+  I++ELALP L +QI+ALE + Q Y++EERVRSGDTLA+LL+RLGVDD+EA AFI
Sbjct: 54  NLPIKSITQELALPHLAEQIAALEAKPQNYISEERVRSGDTLATLLDRLGVDDNEAAAFI 113

Query: 171 KSDTLARSVMQLRAGKRVVAQTDDNGELVKLSATLDDG-SDTPKNLVISRQDGKLTAQAQ 229
           KSD +ARSVMQL+AGKRV AQTD NGEL  LS+T+  G ++   N+VI+R+  +L A   
Sbjct: 114 KSDPIARSVMQLKAGKRVQAQTDANGELNWLSSTVTAGRNEALTNIVITREGNRLKAAEV 173

Query: 230 PAVLERRVEMRAGIIYSSLFAATDAAQIPDAVAMQLVDMFATNINFASDLRRGDRFNVVY 289
           P  +E+R+EMR+G I SSLFAATDAAQIPD +A Q+VDMF+TNI+F SDLRRGDRFNVVY
Sbjct: 174 PVAMEKRIEMRSGTIRSSLFAATDAAQIPDNIASQIVDMFSTNIDFGSDLRRGDRFNVVY 233

Query: 290 ETYYQNGDLVRTGRVLAGEFDNAGNRYQAVWFSDPASKTGGGGYYAFDGKSLKKAFLKSP 349
           ET++QNG+ V  GRVLAGEF N    YQ+VWF DPAS   GG YY FDGKSLKKAFLKSP
Sbjct: 234 ETFWQNGEYVHAGRVLAGEFMNGPATYQSVWFEDPASPQSGG-YYGFDGKSLKKAFLKSP 292

Query: 350 LAFTRISSGFSMRLHPILGKWKQHTGVDFAAPTGTPIHAAADGVIDFVGQQNGYGNIVVI 409
           L F+RISSGFS+R HPI GKWK H GVDFAA TGTPI A+ DGVIDF G Q GYGN+VVI
Sbjct: 293 LEFSRISSGFSLRKHPISGKWKAHKGVDFAAATGTPIRASGDGVIDFAGTQGGYGNVVVI 352

Query: 410 KHWSGYSTAYGHMSRFAPKLKKGMKVSQNDVIGFVGMTGWATGPHLHYEFRVNNQPRNPL 469
           KHWS YSTAY HMSRFAP ++KG KVSQ  VIG+VG TGW+TGPHLHYEFRVNN+ R+P+
Sbjct: 353 KHWSKYSTAYAHMSRFAPNMRKGTKVSQGQVIGYVGTTGWSTGPHLHYEFRVNNEARDPM 412

Query: 470 SVDVPNNQALTGPQLQRFRAVAADMQHRMAMLRVPGAPDVKLAA 513
           SVD+PN   L   Q+QRFR VA +M HR A+L +P   + +LAA
Sbjct: 413 SVDIPNAAPLAAAQMQRFRNVAGEMSHRFALL-IPENNNTRLAA 455


>gi|134095961|ref|YP_001101036.1| putative metalloendopeptidase
           [Herminiimonas arsenicoxydans]
          Length = 233

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 2/120 (1%)

Query: 349 PLAFTRISSGFSMRLHPILGKWKQHTGVDFAAPTGTPIHAAADGVIDFVGQQNGYGNIVV 408
           P+  +  +S F  RL P  G+   H G+DFAAP GTPI AAA GV+        YGN++ 
Sbjct: 100 PVNVSYNASTFGRRLDPFSGRSAMHEGIDFAAPIGTPIRAAAGGVVTVAEFHPQYGNMME 159

Query: 409 IKHWSGYSTAYGHMSRFAPKLKKGMKVSQNDVIGFVGMTGWATGPHLHYEFRVNNQPRNP 468
           I H +   T Y H SR    ++ G  V +   I  +G TG +TGPHLH+E R+    ++P
Sbjct: 160 IDHGNDMITRYAHTSRLL--MQVGDIVRRGQHIADIGTTGRSTGPHLHFEVRIKGVAQDP 217


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 995,522
Number of extensions: 42050
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 2
Length of query: 515
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 429
Effective length of database: 716,977
Effective search space: 307583133
Effective search space used: 307583133
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)