BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0382.p
         (375 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093529|ref|YP_001098604.1| anhydro-N-acetylmuramic acid ki...   445   e-126

>gi|134093529|ref|YP_001098604.1| anhydro-N-acetylmuramic acid
           kinase [Herminiimonas arsenicoxydans]
          Length = 379

 Score =  445 bits (1144), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/380 (60%), Positives = 280/380 (73%), Gaps = 6/380 (1%)

Query: 1   MNDSSDASHLYIGLMSGTSLDGVDGVLARFHGQTLAA-TLAAAYVPFPEHLRADLMALQA 59
           M+     S L+IGLMSGTSLDGVDGVLA F    +   TLA+AYV F + LRA+LMALQ 
Sbjct: 1   MSTPDSRSALFIGLMSGTSLDGVDGVLAAFSADGMPQQTLASAYVAFSDSLRAELMALQT 60

Query: 60  AGPNEIEREAMAANALAVHYADCVAQLLLQTGKSAGDIRMVGVHGQTIRHRPELGFTRQT 119
           AGP+EI REA+AA+ LA +YA+CV+ LL +   +  ++  +GVHGQTIRHRPE G+TRQT
Sbjct: 61  AGPDEIHREALAAHQLAEYYAECVSTLLREAKIAPENVLAIGVHGQTIRHRPEAGYTRQT 120

Query: 120 NNPALLAELCGIDIVADLRSRDVAAGGQGAPLVPAFHRAIFGDATQSRVVVNIGGIANIS 179
           NNPA LAE  GID+VAD RSRD+AAGGQGAPLVPAFH A+F DA ++RV+VNIGGI NIS
Sbjct: 121 NNPASLAEWTGIDVVADFRSRDIAAGGQGAPLVPAFHHALFSDAGENRVLVNIGGICNIS 180

Query: 180 ILPAGEDG-ASGFDTGPGNALLDGWIQLHQQRSYDTDGDWGASGQVHAGLLRQLREEAFF 238
           +L    +    GFDTGPGN L+D WI  H  + YD +GDW  +G+V+A LL+ LR+EAFF
Sbjct: 181 VLSHDRNAPVIGFDTGPGNVLMDAWIAQHNGQPYDANGDWAKTGKVNAALLKALRDEAFF 240

Query: 239 HAAPPKSSGRDLFHLDWLQAALARTGEAIAANDVQATLAMLTASTIADAIRLHAADARQV 298
              PPKS+GRDLFH  WL   LA   +  +A DVQATLA+ TA+T++DAI+ HA   + V
Sbjct: 241 SMPPPKSTGRDLFHPAWLAHKLADFPQVHSA-DVQATLAVFTATTLSDAIKTHAPQTQAV 299

Query: 299 YVCGGGVGNALLMRMLQQQL---PPHTSVQSTAVLGVAPQHVEALAFAWLARRFDLRLPG 355
           YVCGGG  N  LM ++   L    P   V STA LGVAP  +EALAFAWLA+RF +R PG
Sbjct: 300 YVCGGGAYNDYLMTLIHYALRLHNPSIRVASTAALGVAPNQMEALAFAWLAQRFYMREPG 359

Query: 356 NLPAVTGARGLRVLGALYPA 375
           NLP+VTGARGLR+LGALYPA
Sbjct: 360 NLPSVTGARGLRILGALYPA 379


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 760,511
Number of extensions: 32747
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 292
Effective length of database: 726,862
Effective search space: 212243704
Effective search space used: 212243704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)