BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0381.p
         (155 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095631|ref|YP_001100706.1| putative outer membrane lipopro...    70   6e-14
gi|134095414|ref|YP_001100489.1| putative signal peptide [Hermin...    54   5e-09

>gi|134095631|ref|YP_001100706.1| putative outer membrane
           lipoprotein [Herminiimonas arsenicoxydans]
          Length = 160

 Score = 69.7 bits (169), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 90/158 (56%), Gaps = 14/158 (8%)

Query: 9   SLAIVSASFAGILIGCASPQQPYGAAPSSQDYER--------VASYSGTGVVEAIEVTHK 60
           ++  ++ S   IL GCA    PY   P +  Y +         A  S  GVV++I+V  +
Sbjct: 6   TITAIALSSVFILAGCAG---PYNNDPGANQYPQSQNQMSNAPAYNSAYGVVDSIQVVQQ 62

Query: 61  ES---NGVAGAVVGGVAGGLLGNAVGGGTGRTLATVAGAAGGAYAGNQVQRNNSAGHQVY 117
            +      AGAVVGGV GG+LGN +G G+GRT AT  G  GGA  GNQ+QRNN      Y
Sbjct: 63  STGNNGIGAGAVVGGVVGGVLGNQIGSGSGRTAATAVGVVGGALVGNQIQRNNQQVRDTY 122

Query: 118 NIRVRMNDGSLQTFAQEDNTDFRVGDRVRLDNGRISRY 155
            + +R+++G+ QT   +   D RVG+RVR++N R+ RY
Sbjct: 123 QVGIRLDNGAYQTMLLDSVGDLRVGNRVRIENNRLFRY 160


>gi|134095414|ref|YP_001100489.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 226

 Score = 53.5 bits (127), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 80  NAVGGGTGRTLATVAGAAGGAYAGNQVQRNNSAGHQVYNIRVRMNDGSLQTFAQEDNTDF 139
           N +G G+GR+LATVAGA GG +AGN++++        Y +RVRM DG ++TF  ++  ++
Sbjct: 152 NQIGNGSGRSLATVAGAVGGGFAGNEIEKRTRTAM-TYEVRVRMEDGKIRTFPYDNQPNW 210

Query: 140 RVGDRVRLDNG 150
             GDRVR+ +G
Sbjct: 211 SAGDRVRVVDG 221


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 209,396
Number of extensions: 6209
Number of successful extensions: 17
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 81
Effective length of database: 756,517
Effective search space: 61277877
Effective search space used: 61277877
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 125 (52.8 bits)