BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0380.p
         (321 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095914|ref|YP_001100989.1| Mg2+/Co2+ transporter [Herminii...   555   e-159
gi|134093369|ref|YP_001098444.1| magnesium/cobalt transporter Co...    65   3e-12

>gi|134095914|ref|YP_001100989.1| Mg2+/Co2+ transporter
           [Herminiimonas arsenicoxydans]
          Length = 322

 Score =  555 bits (1429), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 265/321 (82%), Positives = 293/321 (91%)

Query: 1   MINVFVLQNGRLSQVNIDSRTDLEQAAPVWVDLTEPNDEERAWVKSIYGVTLPDEDEFSD 60
           MINVFVLQNGRLSQVNID R DLE + PVWVDLT+P+DEER WV+SIYGVTLP ED F D
Sbjct: 1   MINVFVLQNGRLSQVNIDRREDLENSMPVWVDLTDPSDEERDWVRSIYGVTLPGEDNFKD 60

Query: 61  IEASARYFEAENGDLHLRTDFLFEGDDDTSSTMTVAFILARNILFSVHAEDLPVFRLVRM 120
           IEASARY+EAENGDLHLRTDFL E DD  S  +TVAFILAR++LFS+H++DLP+FRLVRM
Sbjct: 61  IEASARYYEAENGDLHLRTDFLLEEDDGPSRVITVAFILARDMLFSLHSDDLPIFRLVRM 120

Query: 121 RARSRPGSIGDYRDVLLDLYETDAEYSADALEGIYQKLEAVSTSVLKKSLSDQDAAEVLN 180
           RARSRPGSI DY+DVLLDLY TDAEYSADALEG+Y+ L+ VS +VL++ L+D+DAA  LN
Sbjct: 121 RARSRPGSIADYKDVLLDLYATDAEYSADALEGVYESLDEVSRAVLQEELTDKDAASALN 180

Query: 181 TIAHEEDLNGRIRRNMMDTRRAVSFLMRGRLLSSEQFEDARQILRDIESLDGHTAFLFDK 240
            IAHEEDLNGRIRRNMMDTRRAVSFLMRGRLL++EQFE+ARQI+RDIESLDGHTAFLFDK
Sbjct: 181 AIAHEEDLNGRIRRNMMDTRRAVSFLMRGRLLNAEQFEEARQIMRDIESLDGHTAFLFDK 240

Query: 241 INFLMDATVGFININQNKIIKIFSVASVAFLPPTLIASIYGMNFKVMPELDWAVGYPLAI 300
           INFLMDATVGFININQNKIIKIFSVASVAFLPPTLIASIYGMNFKVMPELDW  GYPLA 
Sbjct: 241 INFLMDATVGFININQNKIIKIFSVASVAFLPPTLIASIYGMNFKVMPELDWTFGYPLAG 300

Query: 301 LMMVGSAIAPFWYFRRRGWLN 321
           ++M+ SAIAPFWYFRRRGWL 
Sbjct: 301 VLMLASAIAPFWYFRRRGWLK 321


>gi|134093369|ref|YP_001098444.1| magnesium/cobalt transporter CorA
           [Herminiimonas arsenicoxydans]
          Length = 321

 Score = 65.5 bits (158), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 142/348 (40%), Gaps = 56/348 (16%)

Query: 1   MINVFVLQNG-RLSQVNIDSRTDLEQA--APVWVDL--TEPNDEER----------AWVK 45
           +IN    Q+G +LS + I+  +D  +     VWV L   EP + E+          A   
Sbjct: 2   LINCVAYQDGNKLSDITIEEISDYLKRPNCFVWVALKDAEPAELEQMQEEFNLHDLAVED 61

Query: 46  SIYGVTLPDEDEFSD-IEASARYFEAENGDLHLRTDFLFEGDDDTSSTMTVAFILARNIL 104
           ++ G   P  +E+ D +    +  E   G +H+    +F G                N +
Sbjct: 62  AMKGHQRPKVEEYGDSLFVVVKTAEMVEGTVHIGELDIFVGP---------------NYV 106

Query: 105 FSVHAEDLPVFRLVRMRARSRPGSIGDYRD-VLLDLYETDAEYSADALEGIYQKLEAVST 163
            SV       F  VR R    P  +      VL  L +   +     +E +  +LE +  
Sbjct: 107 LSVRNRSSQGFLGVRARCEQEPEQLRKGSAFVLYALMDAVVDRYFPVVEALESELEFIEG 166

Query: 164 SVLKKSLSDQDAAEVLNTIAHEEDLNGRIRRNMMDTRRAVSFLMRGRLLSSEQFEDARQI 223
            +  K  S +   E L  +  E  +   +   +M++   V  L  GR+ S    E  R+ 
Sbjct: 167 KIFHKG-SQRANIERLYELKREVVMLKHVVAPLMES---VGKLYGGRVPS--LCESTREY 220

Query: 224 LRDIESLDGHTAFLFDKINFLMDA-----------TVGFININQNKIIKIFSVASVAFLP 272
            RD+    G   +   +IN L DA            +  + I ++++ K  +  +  F  
Sbjct: 221 FRDV----GDHLY---RINALADAFRETITTAIQVNLSMVTIEESEVNKRLAAWAAIFAV 273

Query: 273 PTLIASIYGMNFKVMPELDWAVGYPLAILMMVGSAIAPFWYFRRRGWL 320
            T    ++GMNFK MPEL+W  GYP+++LM+ G     ++ FR+ GWL
Sbjct: 274 ATAFFGLWGMNFKFMPELEWKYGYPVSVLMVAGVCGYLYYRFRKSGWL 321


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 557,512
Number of extensions: 20732
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 321
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 239
Effective length of database: 730,157
Effective search space: 174507523
Effective search space used: 174507523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)