BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0379.p
         (235 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095915|ref|YP_001100990.1| monofunctional biosynthetic pep...   354   2e-99
gi|134096281|ref|YP_001101356.1| murein polymerase, bifunctional...    88   3e-19
gi|134094841|ref|YP_001099916.1| murein polymerase, bifunctional...    82   3e-17

>gi|134095915|ref|YP_001100990.1| monofunctional biosynthetic
           peptidoglycan transglycosylase [Herminiimonas
           arsenicoxydans]
          Length = 231

 Score =  354 bits (908), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 176/231 (76%), Positives = 205/231 (88%)

Query: 1   MKSLRKLLFWIIVLPITLVLLLQLYFFVQIWWWKDHNPDSTSFMRHQLELLREKDPNAQL 60
           MK LRKLLFW+I++PI LVLL+QLYFF+QI WW +HNPDSTSFMR QL +L++K+P AQL
Sbjct: 1   MKILRKLLFWLILVPILLVLLMQLYFFLQIGWWVNHNPDSTSFMRQQLSVLQDKNPQAQL 60

Query: 61  QFRWVPYARISNNLKRAIIASEDANFTEHDGIDWEALQKAYEKNEKKGKVVAGGSTITQQ 120
           + +WVPY RISNNLKRAIIASED+NF+ H+GIDW+AL+KAYEKN +KGKVVAGGSTITQQ
Sbjct: 61  KHKWVPYKRISNNLKRAIIASEDSNFSGHEGIDWDALEKAYEKNVRKGKVVAGGSTITQQ 120

Query: 121 LAKNLFLSGERSYLRKGQEFIITYMLEFLLDKQRIFEIYLNVVEWGNGVFGAEAAAQHYY 180
           LAKNLFLSG+RSY+RKGQE +ITYMLE+ +DK+RIFEIYLNVVEWG GVFGAEAAAQHYY
Sbjct: 121 LAKNLFLSGDRSYIRKGQEVVITYMLEYWMDKERIFEIYLNVVEWGVGVFGAEAAAQHYY 180

Query: 181 RTTAAGLGAEQAARLAVMLPRPRYYDRNRGSGYLAARTSLILRRMNAATLP 231
            T+AA L A QAARLAVMLP PR+YD +RG+ YL  RT LILRRM +A LP
Sbjct: 181 GTSAAQLSAPQAARLAVMLPNPRFYDTHRGTAYLGRRTDLILRRMGSAELP 231


>gi|134096281|ref|YP_001101356.1| murein polymerase, bifunctional
           murein transglycosylase and transpeptidase;
           penicillin-binding protein PBP1A; dimeric [Herminiimonas
           arsenicoxydans]
          Length = 683

 Score = 88.2 bits (217), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 1/152 (0%)

Query: 74  LKRAIIASEDANFTEHDGIDWEALQKAYEKNEKKGKVVAGGSTITQQLAKNLFLSGERSY 133
           +K+A++A ED  F EH G+D+  + +A   N   G    G STITQQ+A+N FLS E++ 
Sbjct: 1   MKKAVLAIEDDRFFEHGGVDYVGIVRAAVHN-LSGGARQGASTITQQVARNFFLSSEQTL 59

Query: 134 LRKGQEFIITYMLEFLLDKQRIFEIYLNVVEWGNGVFGAEAAAQHYYRTTAAGLGAEQAA 193
            RK  E ++ + +E  L K +I E+Y+N +  G   +G  +AAQ YY      +   +AA
Sbjct: 60  KRKIYEVLLAWKIEKNLSKDQILEVYMNQIYLGQRAYGFSSAAQIYYGKKLQNITIAEAA 119

Query: 194 RLAVMLPRPRYYDRNRGSGYLAARTSLILRRM 225
            LA +   P  Y+         AR   IL+RM
Sbjct: 120 MLAGLPKAPSAYNPVVNPKRARARQQYILQRM 151


>gi|134094841|ref|YP_001099916.1| murein polymerase, bifunctional
           murein transglycosylase and transpeptidase;
           penicillin-binding protein PBP1A; dimeric (Mca like)
           [Herminiimonas arsenicoxydans]
          Length = 837

 Score = 82.0 bits (201), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 1/163 (0%)

Query: 64  WVPYARISNNLKRAIIASEDANFTEHDGIDWEALQKAYEKNEKKGKVVAGGSTITQQLAK 123
           +V    I +++K AIIA ED NF EH G+D   + +A   N  + +   G STIT Q+A+
Sbjct: 103 FVSIGEIPSSMKNAIIAIEDNNFYEHGGVDLLGVVRAGLANIVRSR-SQGASTITMQVAR 161

Query: 124 NLFLSGERSYLRKGQEFIITYMLEFLLDKQRIFEIYLNVVEWGNGVFGAEAAAQHYYRTT 183
              L+ +++Y RK QE ++ Y +E  L K +I E+Y+N +  G   +G  +AA+ Y+   
Sbjct: 162 TFLLTRKKTYSRKLQEVLLAYRIEQNLTKDQILELYMNQIYLGQRAYGFGSAARIYFGKP 221

Query: 184 AAGLGAEQAARLAVMLPRPRYYDRNRGSGYLAARTSLILRRMN 226
              L   +AA LA +   P   +          R   IL+RM+
Sbjct: 222 IKDLSIAEAAMLAGIPKAPASANPVVNPKRATERQQYILKRMH 264


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 392,639
Number of extensions: 14416
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 3
Length of query: 235
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 156
Effective length of database: 740,042
Effective search space: 115446552
Effective search space used: 115446552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)