BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0378.p
         (271 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095916|ref|YP_001100991.1| dehydroshikimate reductase [Her...   348   1e-97

>gi|134095916|ref|YP_001100991.1| dehydroshikimate reductase
           [Herminiimonas arsenicoxydans]
          Length = 273

 Score =  348 bits (894), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 173/268 (64%), Positives = 203/268 (75%)

Query: 2   DEYVVIGNPIAHSKSPEIHARFAVQTGQQLHYDRLLVPLRGFKAAVQVFQRRGGCGANVT 61
           D Y VIGNPIAHSKSP+IHARFA QT Q + Y+ LL PL GF A VQ F R GG G NVT
Sbjct: 6   DRYAVIGNPIAHSKSPDIHARFAAQTQQDMRYEPLLAPLDGFLATVQDFVRNGGKGVNVT 65

Query: 62  VPFKLEAHALADQLTERARLAGAVNTLKFEGGRILGDNTDGAGLVTDIMSNAGQALAGRR 121
           VPFKLEA+ALA  LTERAR AGAVNTLKF+G  +LGDNTDG GLV+DI+ NA   +A + 
Sbjct: 66  VPFKLEAYALATTLTERARAAGAVNTLKFDGADMLGDNTDGFGLVSDIVRNAKVEIANKS 125

Query: 122 ILLLGAGGAARGALLPLLQQKPRELVIVNRTATKAAELAKLFVEYGPVRSVAYAELDGVF 181
           +LLLGAGGAARG LLPLL ++P  LV+ NRT +KA +LA  F     ++   +A+LD  F
Sbjct: 126 VLLLGAGGAARGVLLPLLHEQPARLVLANRTHSKALDLAHRFAAQPRLKVSTFADLDDSF 185

Query: 182 DVIINATSASLSDDLPPLPVSVYGCETLAYDMMYGRQPTVFMHSAQQHGASVRDGLGMLV 241
           D++INAT+ASL+ ++PP+   V+   TLAYDMMYG QPT FM  A QHGA+VRDGLGMLV
Sbjct: 186 DIVINATAASLASEVPPISPRVFTAHTLAYDMMYGAQPTAFMRFAAQHGATVRDGLGMLV 245

Query: 242 EQAAEAFQWWRGVRPATAEVFASLRQQL 269
           EQAAE+F  WRGVRP TA VFA LR QL
Sbjct: 246 EQAAESFYLWRGVRPETAAVFAELRAQL 273


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 445,465
Number of extensions: 16090
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 191
Effective length of database: 736,747
Effective search space: 140718677
Effective search space used: 140718677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)