BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0377.p
         (293 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095917|ref|YP_001100992.1| hypothetical protein HEAR2754 [...   317   5e-88

>gi|134095917|ref|YP_001100992.1| hypothetical protein HEAR2754
           [Herminiimonas arsenicoxydans]
          Length = 249

 Score =  317 bits (812), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 152/245 (62%), Positives = 192/245 (78%), Gaps = 3/245 (1%)

Query: 48  LVNAKHDKKPVQAQALAQANLDGGGNAEDGRAKSPLPDMQHVESGDSVKAAQRKVAELEQ 107
           +VNAKHDK P++A ALAQANLDGGGNA+ GRAKSPLPD +  E GDS KAA+RKV ELE+
Sbjct: 1   MVNAKHDKAPLKADALAQANLDGGGNADAGRAKSPLPDFRKSEDGDSAKAARRKVEELER 60

Query: 108 QQRKMLAQL-QASQQHVTSADQHQPTQ--APQPDARDLTETARAMARMEAEVAKDIAQYN 164
            Q+K+L+QL + +          +P +   PQ +A D+ ++A+A+ R EAE+A+ +  YN
Sbjct: 61  HQQKLLSQLARKTPFRAPQVTDVEPVKDLPPQRNATDMLDSAKALLRREAEIARSVEDYN 120

Query: 165 KRPKKTQITPSTREVGYAQYFKALQDRIEKVGTLNFPTRDGKKLYGELLVVIPVFQDGTL 224
           KRPKKTQ+TPSTREVGYA Y+KA QDRIEK GTLNFP +DGKKLYG+L++ IP+FQDGT+
Sbjct: 121 KRPKKTQVTPSTREVGYAAYYKAFQDRIEKYGTLNFPQKDGKKLYGDLILFIPIFQDGTI 180

Query: 225 YERDGGVVVRSSSGNAALDQAAVAIVRRSAPFGRFPENMRTSGKDDVWEVIVTFRFTREQ 284
           Y +DGG  V  SSGN ALDQAA+ IVRRS PFG+FPE+MR+SGKDDVWE+I  F FTR+ 
Sbjct: 181 YMKDGGPRVERSSGNPALDQAALNIVRRSVPFGKFPEHMRSSGKDDVWEIITRFSFTRDD 240

Query: 285 GVQAQ 289
            +Q +
Sbjct: 241 ALQTE 245


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 491,411
Number of extensions: 18160
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 212
Effective length of database: 733,452
Effective search space: 155491824
Effective search space used: 155491824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)