BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0376.p
         (697 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095918|ref|YP_001100993.1| exoribonuclease II domain-conta...   998   0.0  

>gi|134095918|ref|YP_001100993.1| exoribonuclease II
           domain-containing protein [Herminiimonas arsenicoxydans]
          Length = 675

 Score =  998 bits (2579), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/660 (73%), Positives = 558/660 (84%), Gaps = 7/660 (1%)

Query: 17  MTQQGESYQVEMASGKRAKVKSRDALLQFAAPSPQELLQQAQAIAEEIDLDFLWEVAGEE 76
           M+QQGE++QVEM SGKR KV+++D LLQFAAPSP E + +A AIAEEIDLDFLWEVAG+E
Sbjct: 1   MSQQGEAFQVEMPSGKRTKVRAKDVLLQFAAPSPTEFMAEAHAIAEEIDLDFLWEVAGQE 60

Query: 77  EFGFTDLAAEYFGHAPLPPEAAGLLLRLHHAPIYFYKKGRGRYKAAPQASLQAALAGLEK 136
           EFGF +L  EYFGHAP P EAAGL+LRLH APIYFYKKG+GRYKAAP+ASL+AALAG+EK
Sbjct: 61  EFGFAELGTEYFGHAPKPHEAAGLILRLHAAPIYFYKKGKGRYKAAPEASLKAALAGVEK 120

Query: 137 KKQQLAAQAVYVEELKAHKLPEAFRPIALQLLFKPDKNGIEFKALDAAAKELQTTPQRLM 196
           K+QQ   QA YV ELKAH+LPEA RP+  QLLFKPDKN IE+KALDAA  ELQ  PQRLM
Sbjct: 121 KRQQALIQAQYVAELKAHRLPEAMRPLVRQLLFKPDKNSIEYKALDAACSELQIAPQRLM 180

Query: 197 LAAGGVASPKDLHYARFLYEFFPRGTGFPAIDIPTPPGDLPLADVQAFSIDDVTTTEIDD 256
           LA GG+AS ++LH+++FL+E FP+G  FP I IP  P DLPLADVQAFSIDDVTTTEIDD
Sbjct: 181 LAVGGIASARELHFSKFLFESFPKGLAFPEIAIPVLP-DLPLADVQAFSIDDVTTTEIDD 239

Query: 257 ALSVTRLPDGKLRVGIHIAAPALAIKRGDAIDAIARARMSTVYMPGEKITMLPDDLVATY 316
           A+SVTRLPDG + +GIHIAAPAL IKR DA+DAIAR R+STVYMPG+KITMLPD+LV  Y
Sbjct: 240 AMSVTRLPDGNVCIGIHIAAPALGIKRDDALDAIARQRLSTVYMPGDKITMLPDELVDAY 299

Query: 317 TLDAGAARPALSLYATLDAGTWEVLATETRAERVPIAANLRHNDLDELVTEEALADNRGD 376
           TL  G   PALSLY TLD   W V+A+ETRAERVPIAANLRHNDLD  VTEE LA + GD
Sbjct: 300 TLAEGKVCPALSLYVTLDPADWSVIASETRAERVPIAANLRHNDLDAYVTEENLAADVGD 359

Query: 377 YPHKEEISLLWQWAQLLEQGRMAKRESFGLRPEQNNRVDFNFYVDNDVVSIVRRRRGAPL 436
           YP+K++ISLLW+WAQ+LEQGRMAKRESFGLRPEQ NRVDFNFYV+NDVVSI RR+RGAPL
Sbjct: 360 YPYKDDISLLWKWAQVLEQGRMAKRESFGLRPEQTNRVDFNFYVENDVVSIQRRKRGAPL 419

Query: 437 DKIVAELMIFANSTWGKLMADHGVPGIYRAQGGGAG-GWAAKMQVRMVTHAAPHQGLGVD 495
           DKIVAEL I  NS+WGKL+ DHGVPGIYRAQGGG+G GWAAKMQVRM THAAPHQGLGVD
Sbjct: 420 DKIVAELAILTNSSWGKLLHDHGVPGIYRAQGGGSGNGWAAKMQVRMQTHAAPHQGLGVD 479

Query: 496 QYAWSTSPLRRYTDLVNQWQILACVEHGVTAPLVAPFKPRDADLFAIVSGFDAAYSGYAD 555
           QYAWSTSPLRRYTDLVNQWQILACV++GVTA LVAPFK RDADLFAIVS FDAAYS YA 
Sbjct: 480 QYAWSTSPLRRYTDLVNQWQILACVDNGVTAQLVAPFKQRDADLFAIVSAFDAAYSAYAA 539

Query: 556 FQSTMERYWCLRWLAQENAR----TVEAVVLKDEILRLVDIPLVLRMPGLPQLARGLQVK 611
           FQ+ MERYWCLRWL+QE        VEA VLK+EILRL DIPLV+++PG+PQ+ARG QV+
Sbjct: 540 FQADMERYWCLRWLSQEKGTDETIKVEATVLKEEILRLTDIPLVIKLPGMPQVARGSQVR 599

Query: 612 LDLLRWDEVDLSVEARLLEVPTAAAQALASDLGEE-DEELLEGMAALGAEQQEGSEAAEE 670
           LDLLRWDEVDL++EARLL++   A  +   +L E+  E+LLEG A    ++Q  +EA E+
Sbjct: 600 LDLLRWDEVDLTIEARLLDITHDAGNSPQVELDEDMSEDLLEGDAEPVPDEQAAAEALEK 659


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,150,613
Number of extensions: 43395
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 609
Effective length of database: 710,387
Effective search space: 432625683
Effective search space used: 432625683
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)