BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0375.p
         (194 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095919|ref|YP_001100994.1| putative chorismate--pyruvate l...   136   8e-34

>gi|134095919|ref|YP_001100994.1| putative chorismate--pyruvate
           lyase [Herminiimonas arsenicoxydans]
          Length = 193

 Score =  136 bits (342), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 75/157 (47%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 22  RAWLADPGSMTLKLKARTETFTVRLLRQRPGRILADEHEALCISARSRVVERDVILLADG 81
           R WL D  S+T KL AR E F V+ L QR   +L DE  A+ +  R ++ ERDV+L  D 
Sbjct: 29  RHWLTDTMSLTKKLIARCECFRVQRLAQRRALVLPDEVAAVALPRRVKIQERDVLLRCDE 88

Query: 82  TPVVFGHTVLSTASVKSDWPFFSKLGTTPLGANLFFDPLVGRRPIQYARLSAGHPLMRRI 141
             VV+ HT++  ++  SDWPFF +LG   LG  LF DP V R  ++YARL A HPL  R 
Sbjct: 89  KAVVYAHTIVPLSATASDWPFFGRLGERSLGTTLFGDPRVWRGELEYARLHAQHPLAMRA 148

Query: 142 AQALPGSELPTSLLARRSLFTRRGGVLMVTDVFLPAL 178
           A AL  + L   LLARR L+ R  G+L+VT+VFLP +
Sbjct: 149 AAAL-DTRLHGPLLARRCLYKRGNGLLLVTEVFLPEI 184


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 380,674
Number of extensions: 14724
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 117
Effective length of database: 746,632
Effective search space: 87355944
Effective search space used: 87355944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)