BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0371.p (551 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 426 e-120 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 395 e-111 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 395 e-111 gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 393 e-110 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 385 e-108 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 426 bits (1094), Expect = e-120, Method: Compositional matrix adjust. Identities = 282/583 (48%), Positives = 376/583 (64%), Gaps = 59/583 (10%) Query: 4 FYHRKIGTKLLLAFASILILTAFLGGFAILQLGKVNDAA---------GELATNWLPSIR 54 F + KIG +L +AF +L+L AF+ +L+L V A LA W+ I Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERLAQQWIKGIE 62 Query: 55 SLNDMKVALSRVRANEAQMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQ-----IS 109 + N ++ +RVR ++ E D I+ + +++++AA +++ +S Sbjct: 63 T-NTVRT-FARVRTSDP-----EQD--------KILQQEMSAISAAVSKQQDELETLVVS 107 Query: 110 EPGEKALYPSVKERIEKFISLHDQTLALLSAGQADQAKQLL--LGPAFQNYLALLGELDK 167 G+K L +V E+ + ++ D + L A A+ + + PA Y+ + E Sbjct: 108 AEGKK-LLATVAEKRATYTAIRDDVMNLREARGAELQNAIANKMKPAADAYIQSV-EAVV 165 Query: 168 LAQVN----LDGSVQSVHIAEATYDQSRFGIIALLVGSLLVGTLLAVFIARIISAPLRTA 223 AQ+N G V ++ Y +R +I L + +L +G +LA + R I+ PL A Sbjct: 166 NAQINNFEDAKGRVDTI------YQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYA 219 Query: 224 GAFANQVAAGDLTAEISASSRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQIS 283 + A VA+GDLT I+ S+DETGQL AL MN+SL ++QVRSG +TIATASNQI+ Sbjct: 220 VSVARLVASGDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIA 279 Query: 284 TGNLDLSSRTEEQASSLEETASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVH 343 +GNLDLSSRTEEQASSLEETAS+ME+LTSTV+QNA+NARQANQLA+TAS +A++GG VV Sbjct: 280 SGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVS 339 Query: 344 QVIETMGNIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRS 403 +V++TM I+ S++KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRS Sbjct: 340 KVVDTMDGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRS 399 Query: 404 LAQRSATAAKEIKSLIDSSVQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNE 463 LAQRSA AAKEIK+LID SV +V GS LV +AG TM +VV SV+RVTD+M EI AAS E Sbjct: 400 LAQRSAAAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQE 459 Query: 464 QTQGIEQVNLAITQMDEVTQQNAALVEEAASASQSLSHQTRQLSELVGVFRLPGRA---- 519 Q+ GIEQVN AI QMD+VTQQNAALVEEAA+A++SL+ Q L++ V +F+L G A Sbjct: 460 QSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDGVANSSR 519 Query: 520 ------VQATGAALAE--VAPPAPGAIAG---PANSDELWKTF 551 V A+ A A PAP IA P + D+ W+ F Sbjct: 520 VATRLPVAASNAPATRQFAASPAPKKIANETRPVSGDD-WEEF 561 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 395 bits (1016), Expect = e-111, Method: Compositional matrix adjust. Identities = 267/544 (49%), Positives = 354/544 (65%), Gaps = 42/544 (7%) Query: 8 KIGTKLLLAFASILILTAFLGGFAILQLGKVNDAAGEL----------ATNWLPSIRSLN 57 KIGT+L L F IL+L A +G I++L +N A+ L A NWL Sbjct: 7 KIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLLGTSVNA 66 Query: 58 DMKVALSRVRANEAQMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQISEPGEKALY 117 +AL + E+Q + + + I I +K E++I+ EK L+ Sbjct: 67 SRTLALVKASDPESQEFFQKAITAQSKQITEI-----------QKSIEDRINSDKEKELF 115 Query: 118 PSVKERIEKFISLHDQTLALLSAGQADQAKQLL---LGPAFQNYLALLGELDKLAQVNLD 174 V ++ +I + L + + G +A Q++ + PA Y+ D + V L Sbjct: 116 AEVAKKRSAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYV------DSVKNV-LG 168 Query: 175 GSVQSVHIA-EATYDQSRFGIIALLVGS---LLVGTLLAVFIARIISAPLRTAGAFANQV 230 V +A E+ D G +AL++G+ +L+GTL+A + I+ PL A A V Sbjct: 169 HYENEVKLADESITDDYLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESV 228 Query: 231 AAGDLTAEIS-ASSRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTGNLDL 289 A GDLTA A ++DE G L +AL M +L R V+Q+R GT+TIATAS++I++GNLDL Sbjct: 229 AEGDLTARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDL 288 Query: 290 SSRTEEQASSLEETASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQVIETM 349 SSRTE+QASSLEETAS+ME+LTSTV+QNA+N+RQANQLA+ AS++A +GG VV QV++TM Sbjct: 289 SSRTEQQASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTM 348 Query: 350 GNIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 409 G I+ S+KKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRSA Sbjct: 349 GAINNSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSA 408 Query: 410 TAAKEIKSLIDSSVQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQTQGIE 469 AAKEIK+LI SV++V GS LV +AG TM ++V V+RV D+M EI+AAS EQ+ GIE Sbjct: 409 AAAKEIKTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIE 468 Query: 470 QVNLAITQMDEVTQQNAALVEEAASASQSLSHQTRQLSELVGVFRLPGRAVQATGAALAE 529 QVN A++QMD+VTQQNAALVEEAA+A++SL Q R L+E V VFR+ +G A A+ Sbjct: 469 QVNQAVSQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRV------GSGYATAQ 522 Query: 530 VAPP 533 A P Sbjct: 523 SAAP 526 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 395 bits (1015), Expect = e-111, Method: Compositional matrix adjust. Identities = 273/576 (47%), Positives = 362/576 (62%), Gaps = 49/576 (8%) Query: 8 KIGTKLLLAFASILILTAFLGGFAILQLGKVNDA------AGE---LATNWLPSIRSLND 58 KIG +L LAFA +L+L A + + +L +V A A E L+ W S N Sbjct: 7 KIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAAEQERLSIQWHAG-NSANA 65 Query: 59 MKVALSRVRAN--EAQMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQISEPGEKAL 116 ++ +R+R+ E Q + + I + NK L SL SE G+K L Sbjct: 66 IRTT-ARIRSTNQEVQQQFQNEMTAQSVEITKLQNK-LESLIH---------SEEGKK-L 113 Query: 117 YPSVKERIEKFISLHDQTLALLSAGQA---DQAKQLL---LGPAFQNYLALLGELDKLAQ 170 +V ++ ++ + + L + G ++AK+++ + PA + Y + ++ Q Sbjct: 114 MSAVGDKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQ 173 Query: 171 VNLDGSVQSVHIAEATYDQSRFGIIALLVGSLLVGTLLAVFIARIISAPLRTAGAFANQV 230 V +++ + Y R ++ L +L + LLA ++R I+ PL A A V Sbjct: 174 VTF---LEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTV 230 Query: 231 AAGDLTAEISASSRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTGNLDLS 290 A GDL I +S DETGQL AL MN+ L + VS+VR+G ETIATASNQI+ GNLDLS Sbjct: 231 AGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLS 290 Query: 291 SRTEEQASSLEETASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQVIETMG 350 SRTEEQASSLEETAS+ME+LTSTV+QNA+NARQANQLA++AS +A++GG VV QV++TM Sbjct: 291 SRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTME 350 Query: 351 NIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAT 410 +I++S+KKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA Sbjct: 351 DINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAA 410 Query: 411 AAKEIKSLIDSSVQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQTQGIEQ 470 AAKEIK+LI SV +V +GS LV +AG TM +VV SV+RVTD+M+EI AAS EQ+ GIEQ Sbjct: 411 AAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQ 470 Query: 471 VNLAITQMDEVTQQNAALVEEAASASQSLSHQTRQLSELVGVFRLPGRAVQATGAALAE- 529 VN AI QMD+VTQQNAALVEEAA+A++SL+ Q +L+E V VF+L G A Sbjct: 471 VNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGVAASTPATKTVRK 530 Query: 530 --------------VAPPAPGAIAGPANSDELWKTF 551 +A P P + DE W+ F Sbjct: 531 IAAAASHHAPAKRAIAAPTPVSPKAATGGDE-WEEF 565 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust. Identities = 271/539 (50%), Positives = 340/539 (63%), Gaps = 37/539 (6%) Query: 4 FYHRKIGTKLLLAFASILILTAFLGGFAILQLGKVNDAAGELATNWLPSIRSLNDMKVAL 63 F + +GTKL+ +F ++ + A + G I +GK+ND AG++ L + + D + L Sbjct: 2 FKNMTVGTKLISSFLTLSVAGAIVAGIGIYNMGKINDKAGDIYNQELMGLSYIKDANIDL 61 Query: 64 ---SRVRANEAQMALYENDSGERTTIANIMNKNLNS----LAAARKDYEEQISEPGEKAL 116 R R N L ERT + K L S LA A+ + +S+ KAL Sbjct: 62 LFIGRARGN----VLLSTTEEERTLNKENIKKYLASAKENLAKAQPLF---VSDSA-KAL 113 Query: 117 ---YPSVKERIEKFISLHDQTLALLSAGQADQAKQLLLGPAFQNYLA------LLGELDK 167 Y +V + EK + + LAL Q L Q L +L EL K Sbjct: 114 FAKYATVSQDYEKEMW---RALALADKEPLQQRSAELTTSMAQTRLHANTLDNVLTELSK 170 Query: 168 LAQVNLDGSVQSVHI-AEATYDQSRFGIIALLVGSLLVGTLLAVFIARIISAPLRTAGAF 226 +V H+ E YD SR ++ L++ S G LL V I R + L + Sbjct: 171 QKEVR----AAQAHVETEQLYDSSRAFMVLLVILSAFSGILLGVLITRNLKGQLGGEPNY 226 Query: 227 ANQVAA----GDLTAEISASSRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQI 282 A VAA GDLT I S+D+T L A+ M +SL IVSQVRSGT+TI TAS QI Sbjct: 227 AAGVAARIAAGDLTVAIDLRSKDQTSML-FAMREMRDSLASIVSQVRSGTDTITTASGQI 285 Query: 283 STGNLDLSSRTEEQASSLEETASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVV 342 + GNLDLSSRTEEQAS+LEETAS+ME++TSTV+QNAEN++QA+ LA+ ASS A GG VV Sbjct: 286 AAGNLDLSSRTEEQASALEETASSMEEITSTVKQNAENSQQASTLAVHASSTAIRGGAVV 345 Query: 343 HQVIETMGNIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR 402 QV++TMG+I SS+KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR Sbjct: 346 SQVVDTMGSITESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR 405 Query: 403 SLAQRSATAAKEIKSLIDSSVQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASN 462 SLAQRSA+AAKEIK LI SV++V GS LV+QAG TM ++V +QRV D+M++I+AA Sbjct: 406 SLAQRSASAAKEIKQLIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDITAAGR 465 Query: 463 EQTQGIEQVNLAITQMDEVTQQNAALVEEAASASQSLSHQTRQLSELVGVFRLPGRAVQ 521 EQ+ GIEQVN AI QMDEVTQQNAALVEEAA+ASQSL Q LSE+V VF+L +Q Sbjct: 466 EQSAGIEQVNQAIAQMDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSVFKLDNTQIQ 524 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 385 bits (990), Expect = e-108, Method: Compositional matrix adjust. Identities = 254/556 (45%), Positives = 345/556 (62%), Gaps = 21/556 (3%) Query: 9 IGTKLLLAFASILILTAFLGGFAILQLGKVNDAAGELATNWLPSIRSLNDMKVALSRVRA 68 I +LLL + ++ G IL + N+ + N +PS +++ M L + RA Sbjct: 7 IKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTRLLQARA 66 Query: 69 NEAQMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQISEPGEKALYPSVKERIEKFI 128 +A+ ++ G + N L S +K I E+ + V + +++ Sbjct: 67 GLNLVAMRPHEEGSERILKRAENFYLQSEEEWKKYLSLPIETLEERKVADEVTAKRIRYL 126 Query: 129 SLHDQTL-ALLSAGQADQAKQLL---LGPAFQNYLALLGELDKLAQVNLDGSVQSVHIAE 184 +Q L A L AG+ ++ + +L + P FQ +L D+L ++ + + ++ Sbjct: 127 KEAEQGLIAALRAGRNEEVEDILVNKMPPLFQ---SLTKSTDELVELQMKSAATGYQDSQ 183 Query: 185 ATYDQSRF-GIIALLVGSLLVGT-LLAVFIARIISAPLRTAGAFANQVAAGDLTAEISAS 242 + R ++ +L+G L+G + A F+ R I+ PL+ + +A+GDLT+ I Sbjct: 184 TLFHYFRIIAVVGVLLG--LIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSNIEVK 241 Query: 243 SRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTGNLDLSSRTEEQASSLEE 302 SR+E G L L M + L V+QVR G+ I+TA+ +I+ GNLDLSSRTE+QA+SLEE Sbjct: 242 SRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEE 301 Query: 303 TASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQVIETMGNIDASSKKIVDI 362 TAS+ME+LTSTV+QN +NARQANQLA +AS++A +GG VV V+ TM I+ S++KIVDI Sbjct: 302 TASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDI 361 Query: 363 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKSLIDSS 422 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIK LID S Sbjct: 362 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDS 421 Query: 423 VQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQTQGIEQVNLAITQMDEVT 482 V +V G+ LV +AG TM +VV SV+RVTD+M+EI AAS EQ+ GIEQVN AI QMDEVT Sbjct: 422 VNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVT 481 Query: 483 QQNAALVEEAASASQSLSHQTRQLSELVGVFRLPGRAVQATGAALAEVAPPA-----PGA 537 QQNAALVE+AA+A+ SL Q LS +V VF+L G Q+ L A P P A Sbjct: 482 QQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQGH--QSAPQNLVPQARPKALESRPAA 539 Query: 538 IA--GPANSDELWKTF 551 IA G N D W+ F Sbjct: 540 IAHTGKGN-DGDWEQF 554 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.125 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 711,266 Number of extensions: 22349 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 15 Length of query: 551 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 465 Effective length of database: 716,977 Effective search space: 333394305 Effective search space used: 333394305 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)